Protein : Qrob_P0504240.2 Q. robur
Protein Identifier  ? Qrob_P0504240.2 Organism . Name  Quercus robur
Score  100.1 Score Type  egn
Protein Description  (M=1) PTHR10799//PTHR10799:SF597 - SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED // SUBFAMILY NOT NAMED Code Enzyme  EC:3.6.4.12
Gene Prediction Quality  validated Protein length 

Sequence

Length: 2241  
Kegg Orthology  K11647
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0 Synonyms

7 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0008094 DNA-dependent ATPase activity Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction requires the presence of single- or double-stranded DNA, and it drives another reaction.
GO:0040029 regulation of gene expression, epigenetic Any process that modulates the frequency, rate or extent of gene expression; the process is mitotically or meiotically heritable, or is stably self-propagated in the cytoplasm of a resting cell, and does not entail a change in DNA sequence.
GO:0043044 ATP-dependent chromatin remodeling Dynamic structural changes to eukaryotic chromatin that require energy from the hydrolysis of ATP, ranging from local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation, mediated by ATP-dependent chromatin-remodelling factors.

47 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa000033mg 10 2240 + 2231 Gaps:54 99.38 2271 80.42 0.0 hypothetical protein
blastp_kegg lcl|pmum:103332106 10 2240 + 2231 Gaps:73 99.38 2254 80.98 0.0 ATP-dependent helicase BRM
blastp_kegg lcl|vvi:100249945 1 2240 + 2240 Gaps:71 100.00 2263 78.88 0.0 ATP-dependent helicase BRM-like
blastp_kegg lcl|tcc:TCM_005306 10 2240 + 2231 Gaps:64 99.38 2267 79.41 0.0 Chromatin remodeling complex subunit
blastp_kegg lcl|rcu:RCOM_1615880 1 2240 + 2240 Gaps:70 100.00 2248 78.87 0.0 Chromo domain protein putative (EC:2.7.11.1)
blastp_kegg lcl|cit:102610032 1 2240 + 2240 Gaps:74 100.00 2240 78.44 0.0 ATP-dependent helicase BRM-like
blastp_kegg lcl|fve:101291753 39 2240 + 2202 Gaps:85 98.49 2253 78.55 0.0 ATP-dependent helicase BRM-like
blastp_kegg lcl|pop:POPTR_0002s16230g 73 2240 + 2168 Gaps:81 97.07 2222 77.56 0.0 POPTRDRAFT_799056 hypothetical protein
blastp_kegg lcl|pxb:103940813 40 2240 + 2201 Gaps:73 98.18 2255 77.15 0.0 ATP-dependent helicase BRM-like
blastp_kegg lcl|mdm:103405393 40 2240 + 2201 Gaps:64 98.18 2258 77.36 0.0 ATP-dependent helicase BRM
blastp_pdb 3mwy_W 1003 1437 + 435 Gaps:92 56.88 800 41.10 2e-90 mol:protein length:800 Chromo domain-containing protein 1
blastp_pdb 1z3i_X 1016 1468 + 453 Gaps:78 77.80 644 27.94 1e-43 mol:protein length:644 similar to RAD54-like
blastp_pdb 1z6a_A 1008 1447 + 440 Gaps:74 86.00 500 32.79 1e-41 mol:protein length:500 Helicase of the snf2/rad54 family
blastp_pdb 1z63_B 1008 1447 + 440 Gaps:74 86.00 500 32.79 1e-41 mol:protein length:500 Helicase of the snf2/rad54 hamily
blastp_pdb 1z63_A 1008 1447 + 440 Gaps:74 86.00 500 32.79 1e-41 mol:protein length:500 Helicase of the snf2/rad54 hamily
blastp_pdb 1z5z_B 1228 1437 + 210 Gaps:27 71.22 271 31.61 2e-08 mol:protein length:271 Helicase of the snf2/rad54 family
blastp_pdb 1z5z_A 1228 1437 + 210 Gaps:27 71.22 271 31.61 2e-08 mol:protein length:271 Helicase of the snf2/rad54 family
blastp_uniprot_sprot sp|Q6EVK6|BRM_ARATH 1 2240 + 2240 Gaps:133 100.00 2193 68.90 0.0 ATP-dependent helicase BRM OS Arabidopsis thaliana GN BRM PE 1 SV 1
blastp_uniprot_sprot sp|F4IHS2|SYD_ARATH 832 1559 + 728 Gaps:140 19.25 3574 44.33 6e-144 Chromatin structure-remodeling complex protein SYD OS Arabidopsis thaliana GN SYD PE 1 SV 1
blastp_uniprot_sprot sp|O94421|SNF22_SCHPO 765 1629 + 865 Gaps:163 50.00 1680 37.50 3e-142 SWI/SNF chromatin-remodeling complex subunit snf22 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN snf22 PE 1 SV 2
blastp_uniprot_sprot sp|Q9UTN6|SNF21_SCHPO 765 1561 + 797 Gaps:162 62.64 1199 42.74 7e-140 Chromatin structure-remodeling complex subunit snf21 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN snf21 PE 1 SV 1
blastp_uniprot_sprot sp|P25439|BRM_DROME 989 1583 + 595 Gaps:99 36.39 1638 44.13 2e-135 ATP-dependent helicase brm OS Drosophila melanogaster GN brm PE 1 SV 2
blastp_uniprot_sprot sp|Q6DIC0|SMCA2_MOUSE 994 1583 + 590 Gaps:105 37.48 1577 46.02 8e-134 Probable global transcription activator SNF2L2 OS Mus musculus GN Smarca2 PE 1 SV 1
blastp_uniprot_sprot sp|P51531|SMCA2_HUMAN 994 1583 + 590 Gaps:105 37.17 1590 46.02 3e-133 Probable global transcription activator SNF2L2 OS Homo sapiens GN SMARCA2 PE 1 SV 2
blastp_uniprot_sprot sp|P51532|SMCA4_HUMAN 994 1583 + 590 Gaps:138 37.89 1647 43.43 3e-131 Transcription activator BRG1 OS Homo sapiens GN SMARCA4 PE 1 SV 2
blastp_uniprot_sprot sp|P32597|STH1_YEAST 765 1559 + 795 Gaps:162 55.85 1359 40.32 4e-131 Nuclear protein STH1/NPS1 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN STH1 PE 1 SV 1
blastp_uniprot_sprot sp|A7Z019|SMCA4_BOVIN 994 1583 + 590 Gaps:105 36.80 1606 45.35 4e-131 Transcription activator BRG1 OS Bos taurus GN SMARCA4 PE 2 SV 1
rpsblast_cdd gnl|CDD|178687 865 1437 + 573 Gaps:105 52.08 1033 41.08 1e-116 PLN03142 PLN03142 Probable chromatin-remodeling complex ATPase chain Provisional.
rpsblast_cdd gnl|CDD|201060 1020 1298 + 279 Gaps:45 99.67 301 39.67 5e-79 pfam00176 SNF2_N SNF2 family N-terminal domain. This domain is found in proteins involved in a variety of processes including transcription regulation (e.g. SNF2 STH1 brahma MOT1) DNA repair (e.g. ERCC6 RAD16 RAD5) DNA recombination (e.g. RAD54) and chromatin unwinding (e.g. ISWI) as well as a variety of other proteins with little functional information (e.g. lodestar ETL1).
rpsblast_cdd gnl|CDD|30899 729 1488 + 760 Gaps:96 93.30 866 25.99 5e-72 COG0553 HepA Superfamily II DNA/RNA helicases SNF2 family [Transcription / DNA replication recombination and repair].

34 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 1316 1447 132 G3DSA:3.40.50.300 none none IPR027417
SMART 1591 2044 454 SM00297 none bromo domain IPR001487
ProSiteProfiles 1029 1166 138 PS51192 none Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. IPR014001
PANTHER 391 416 26 PTHR10799 none none none
Pfam 1354 1430 77 PF00271 none Helicase conserved C-terminal domain IPR001650
ProSiteProfiles 1320 1497 178 PS51194 none Superfamilies 1 and 2 helicase C-terminal domain profile. IPR001650
ProSiteProfiles 489 525 37 PS51666 none QLQ domain profile. IPR014978
PANTHER 983 1438 456 PTHR10799:SF597 none none IPR031056
SUPERFAMILY 1001 1219 219 SSF52540 none none IPR027417
SMART 488 525 38 SM00951 none none IPR014978
PANTHER 391 416 26 PTHR10799:SF597 none none IPR031056
PANTHER 671 949 279 PTHR10799 none none none
PANTHER 1473 1689 217 PTHR10799:SF597 none none IPR031056
SMART 1013 1174 162 SM00487 none DEAD-like helicases superfamily IPR014001
Coils 769 790 22 Coil none none none
Pfam 1020 1083 64 PF00176 none SNF2 family N-terminal domain IPR000330
Pfam 1087 1298 212 PF00176 none SNF2 family N-terminal domain IPR000330
PANTHER 671 949 279 PTHR10799:SF597 none none IPR031056
Coils 1536 1557 22 Coil none none none
SUPERFAMILY 1223 1440 218 SSF52540 none none IPR027417
SUPERFAMILY 1473 1561 89 SSF52540 none none IPR027417
PANTHER 983 1438 456 PTHR10799 none none none
PANTHER 1958 2018 61 PTHR10799 none none none
Gene3D 1981 2055 75 G3DSA:1.20.920.10 none none IPR001487
Gene3D 1084 1162 79 G3DSA:3.40.50.300 none none IPR027417
Gene3D 1010 1083 74 G3DSA:3.40.50.300 none none IPR027417
PANTHER 44 60 17 PTHR10799:SF597 none none IPR031056
PANTHER 1958 2018 61 PTHR10799:SF597 none none IPR031056
PANTHER 1473 1689 217 PTHR10799 none none none
SMART 1346 1430 85 SM00490 none helicase superfamily c-terminal domain IPR001650

0 Localization

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2015_nP_3P Qrob_Chr12 12 v_10140_295 v_838_303 16 14,69 18,01 lod 5.1 13.7
Bourran1_2004_QTL4_peak_Bud_burst_3P Qrob_Chr04 4 s_1AHUWN_1101 s_1BRNG7_1618 30,55 0 47,55 lod 2,8 7,4
Bourran2_2002_QTL10_peak_Bud_burst_A4 Qrob_Chr04 4 s_1B59MJ_737 s_1BGLSD_999 15,86 0 41,66 lod 2,8 4
Bourran1_2000_QTL3_peak_Bud_burst_3P Qrob_Chr04 4 s_1A6DJQ_418 s_1A1PEC_1268 23,09 9,09 44,09 lod 2,3 6,8
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL7_d13Cf Qrob_Chr04 4 s_1B91MJ_705 s_1AHIKX_640 33.92 12,11 48,31 lod 6.1865 0.023

0 Targeting