Protein : Qrob_P0503390.2 Q. robur
Protein Identifier  ? Qrob_P0503390.2 Organism . Name  Quercus robur
Score  83.2 Score Type  egn
Protein Description  (M=1) K06891 - ATP-dependent Clp protease adaptor protein ClpS Gene Prediction Quality  validated
Protein length 

Sequence

Length: 83  
Kegg Orthology  K06891
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0030163 protein catabolic process The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds.

24 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0008s11660g 1 82 + 82 none 51.90 158 96.34 2e-51 POPTRDRAFT_656784 hypothetical protein
blastp_kegg lcl|cam:101507569 2 82 + 81 none 50.31 161 96.30 2e-51 ATP-dependent Clp protease adapter protein ClpS-like
blastp_kegg lcl|tcc:TCM_011852 1 82 + 82 none 51.90 158 93.90 7e-51 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein isoform 1
blastp_kegg lcl|pda:103724139 2 82 + 81 none 60.00 135 95.06 9e-51 uncharacterized LOC103724139
blastp_kegg lcl|rcu:RCOM_0353760 2 82 + 81 none 67.50 120 93.83 1e-50 ATP-dependent Clp protease adaptor protein clpS putative
blastp_kegg lcl|sly:101260326 1 82 + 82 none 51.57 159 93.90 1e-50 ATP-dependent Clp protease adapter protein ClpS-like
blastp_kegg lcl|sot:102601216 1 82 + 82 none 51.57 159 93.90 2e-50 uncharacterized LOC102601216
blastp_kegg lcl|pop:POPTR_0010s13860g 1 82 + 82 none 51.25 160 93.90 2e-50 POPTRDRAFT_822150 hypothetical protein
blastp_kegg lcl|vvi:100247572 1 82 + 82 none 52.23 157 91.46 3e-50 ATP-dependent Clp protease adapter protein ClpS-like
blastp_kegg lcl|vvi:100242343 1 82 + 82 none 52.23 157 92.68 6e-50 ATP-dependent Clp protease adapter protein ClpS-like
blastp_uniprot_sprot sp|Q31QE7|CLPS_SYNE7 1 77 + 77 none 81.05 95 55.84 3e-23 ATP-dependent Clp protease adapter protein ClpS OS Synechococcus elongatus (strain PCC 7942) GN clpS PE 3 SV 1
blastp_uniprot_sprot sp|Q5N3U1|CLPS_SYNP6 1 71 + 71 none 78.02 91 53.52 9e-20 ATP-dependent Clp protease adapter protein ClpS OS Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN clpS PE 3 SV 1
blastp_uniprot_sprot sp|Q3AUR5|CLPS_SYNS9 2 77 + 76 none 73.08 104 44.74 1e-16 ATP-dependent Clp protease adapter protein ClpS OS Synechococcus sp. (strain CC9902) GN clpS PE 3 SV 1
blastp_uniprot_sprot sp|Q7NML9|CLPS_GLOVI 3 77 + 75 none 80.65 93 48.00 1e-15 ATP-dependent Clp protease adapter protein ClpS OS Gloeobacter violaceus (strain PCC 7421) GN clpS PE 3 SV 1
blastp_uniprot_sprot sp|A2BYM5|CLPS_PROM5 2 76 + 75 none 71.43 105 42.67 1e-14 ATP-dependent Clp protease adapter protein ClpS OS Prochlorococcus marinus (strain MIT 9515) GN clpS PE 3 SV 1
blastp_uniprot_sprot sp|P73634|CLPS_SYNY3 3 71 + 69 none 70.41 98 40.58 2e-12 ATP-dependent Clp protease adapter protein ClpS OS Synechocystis sp. (strain PCC 6803 / Kazusa) GN clpS PE 3 SV 1
blastp_uniprot_sprot sp|Q8YZQ3|CLPS_NOSS1 3 71 + 69 none 71.13 97 42.03 2e-11 ATP-dependent Clp protease adapter protein ClpS OS Nostoc sp. (strain PCC 7120 / UTEX 2576) GN clpS PE 3 SV 2
blastp_uniprot_sprot sp|Q8DJY3|CLPS_THEEB 3 77 + 75 Gaps:1 80.85 94 39.47 2e-10 ATP-dependent Clp protease adapter protein ClpS OS Thermosynechococcus elongatus (strain BP-1) GN clpS PE 3 SV 1
blastp_uniprot_sprot sp|Q1CZL3|CLPS_MYXXD 3 80 + 78 Gaps:17 77.57 107 43.37 2e-09 ATP-dependent Clp protease adapter protein ClpS OS Myxococcus xanthus (strain DK 1622) GN clpS PE 3 SV 1
blastp_uniprot_sprot sp|Q8UD95|CLPS2_AGRT5 5 77 + 73 Gaps:7 75.73 103 35.90 1e-07 ATP-dependent Clp protease adapter protein ClpS 2 OS Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN clpS2 PE 3 SV 1
rpsblast_cdd gnl|CDD|178809 2 78 + 77 Gaps:1 76.00 100 42.11 4e-20 PRK00033 clpS ATP-dependent Clp protease adaptor protein ClpS Reviewed.
rpsblast_cdd gnl|CDD|145654 3 75 + 73 Gaps:3 94.87 78 41.89 6e-17 pfam02617 ClpS ATP-dependent Clp protease adaptor protein ClpS. In the bacterial cytosol ATP-dependent protein degradation is performed by several different chaperone-protease pairs including ClpAP. ClpS directly influences the ClpAP machine by binding to the N-terminal domain of the chaperone ClpA. The degradation of ClpAP substrates both SsrA-tagged proteins and ClpA itself is specifically inhibited by ClpS. ClpS modifies ClpA substrate specificity potentially redirecting degradation by ClpAP toward aggregated proteins.
rpsblast_cdd gnl|CDD|183845 3 71 + 69 none 73.40 94 43.48 1e-16 PRK13019 clpS ATP-dependent Clp protease adaptor Reviewed.
rpsblast_cdd gnl|CDD|32310 2 77 + 76 Gaps:1 70.09 107 36.00 7e-14 COG2127 COG2127 Uncharacterized conserved protein [Function unknown].

3 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 2 72 71 PF02617 none ATP-dependent Clp protease adaptor protein ClpS IPR003769
Gene3D 2 78 77 G3DSA:3.30.1390.10 none none IPR014719
SUPERFAMILY 2 77 76 SSF54736 none none IPR014719

0 Localization

10 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL1_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AMVCC_444 s_1BE1VC_321 4 0 31 lod 3,2 7,4
Bourran2_2003_QTL8_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AH7I_610 s_1BE1VC_321 4,6 0 28 lod 3,5 7,4
Bourran2_2007_QTL6_peak_Bud_burst_3P Qrob_Chr01 1 s_1BE1VC_321 s_1A5JRZ_890 5 0 25 lod 2,4 6
Bourran2_2014_nEpiBC_3P Qrob_Chr01 1 v_1588_550 s_1AZJRA_1600 30,48 9,48 43,98 lod 2,3642 6,3
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Bourran2_2014_nSeqBC*_A4 Qrob_Chr01 1 s_1CFE4C_2114 s_1BDNCB_819 15,25 2 28,5 lod 2,9903 8,3

0 Targeting