Protein : Qrob_P0500290.2 Q. robur
Protein Identifier  ? Qrob_P0500290.2 Organism . Name  Quercus robur
Score  100.1 Score Type  egn
Protein Description  (M=1) K08735 - DNA mismatch repair protein MSH2 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 943  
Kegg Orthology  K08735
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0006298 mismatch repair A system for the correction of errors in which an incorrect base, which cannot form hydrogen bonds with the corresponding base in the parent strand, is incorporated into the daughter strand. The mismatch repair system promotes genomic fidelity by repairing base-base mismatches, insertion-deletion loops and heterologies generated during DNA replication and recombination.
GO:0030983 mismatched DNA binding Interacting selectively and non-covalently with double-stranded DNA containing one or more mismatches.

45 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa000981mg 1 942 + 942 none 100.00 942 88.43 0.0 hypothetical protein
blastp_kegg lcl|rcu:RCOM_1617850 5 942 + 938 Gaps:2 100.00 936 89.32 0.0 DNA mismatch repair protein MSH2 putative
blastp_kegg lcl|pmum:103342205 1 942 + 942 none 100.00 942 88.11 0.0 DNA mismatch repair protein MSH2
blastp_kegg lcl|pxb:103938503 1 942 + 942 none 100.00 942 87.58 0.0 DNA mismatch repair protein MSH2-like
blastp_kegg lcl|cic:CICLE_v10018746mg 6 942 + 937 Gaps:1 99.79 938 87.93 0.0 hypothetical protein
blastp_kegg lcl|mdm:103437966 1 942 + 942 none 100.00 942 87.26 0.0 DNA mismatch repair protein MSH2
blastp_kegg lcl|cit:102614656 6 942 + 937 Gaps:1 99.79 938 88.03 0.0 DNA mismatch repair protein MSH2-like
blastp_kegg lcl|pop:POPTR_0012s05670g 4 942 + 939 none 99.47 944 86.37 0.0 POPTRDRAFT_569858 muts homolog 2 family protein
blastp_kegg lcl|tcc:TCM_012253 1 928 + 928 none 95.97 967 87.72 0.0 MUTS isoform 1
blastp_kegg lcl|fve:101293489 1 942 + 942 none 100.00 942 86.73 0.0 DNA mismatch repair protein MSH2-like
blastp_pdb 3thz_A 14 928 + 915 Gaps:46 97.11 934 43.77 0.0 mol:protein length:934 DNA mismatch repair protein Msh2
blastp_pdb 3thy_A 14 928 + 915 Gaps:46 97.11 934 43.77 0.0 mol:protein length:934 DNA mismatch repair protein Msh2
blastp_pdb 3thx_A 14 928 + 915 Gaps:46 97.11 934 43.77 0.0 mol:protein length:934 DNA mismatch repair protein Msh2
blastp_pdb 3thw_A 14 928 + 915 Gaps:46 97.11 934 43.77 0.0 mol:protein length:934 DNA mismatch repair protein Msh2
blastp_pdb 2o8f_A 14 928 + 915 Gaps:46 97.11 934 43.77 0.0 mol:protein length:934 DNA mismatch repair protein Msh2
blastp_pdb 2o8d_A 14 928 + 915 Gaps:46 97.11 934 43.77 0.0 mol:protein length:934 DNA mismatch repair protein Msh2
blastp_pdb 2o8c_A 14 928 + 915 Gaps:46 97.11 934 43.77 0.0 mol:protein length:934 DNA mismatch repair protein Msh2
blastp_pdb 2o8b_A 14 928 + 915 Gaps:46 97.11 934 43.77 0.0 mol:protein length:934 DNA mismatch repair protein Msh2
blastp_pdb 2o8e_A 14 928 + 915 Gaps:40 97.11 934 43.55 0.0 mol:protein length:934 DNA mismatch repair protein Msh2
blastp_pdb 1ewr_B 263 854 + 592 Gaps:63 82.74 649 37.80 3e-76 mol:protein length:649 DNA MISMATCH REPAIR PROTEIN MUTS
blastp_uniprot_sprot sp|O24617|MSH2_ARATH 1 942 + 942 Gaps:5 100.00 937 77.80 0.0 DNA mismatch repair protein MSH2 OS Arabidopsis thaliana GN MSH2 PE 1 SV 1
blastp_uniprot_sprot sp|Q9XGC9|MSH2_MAIZE 1 942 + 942 Gaps:4 100.00 942 71.13 0.0 DNA mismatch repair protein MSH2 OS Zea mays GN MUS1 PE 3 SV 1
blastp_uniprot_sprot sp|Q5XXB5|MSH2_CHLAE 14 928 + 915 Gaps:41 97.11 933 43.93 0.0 DNA mismatch repair protein Msh2 OS Chlorocebus aethiops GN MSH2 PE 2 SV 1
blastp_uniprot_sprot sp|Q3MHE4|MSH2_BOVIN 14 928 + 915 Gaps:46 97.11 934 44.10 0.0 DNA mismatch repair protein Msh2 OS Bos taurus GN MSH2 PE 2 SV 1
blastp_uniprot_sprot sp|P43247|MSH2_MOUSE 14 928 + 915 Gaps:40 97.01 935 43.44 0.0 DNA mismatch repair protein Msh2 OS Mus musculus GN Msh2 PE 2 SV 1
blastp_uniprot_sprot sp|P43246|MSH2_HUMAN 14 928 + 915 Gaps:46 97.11 934 43.77 0.0 DNA mismatch repair protein Msh2 OS Homo sapiens GN MSH2 PE 1 SV 1
blastp_uniprot_sprot sp|P54275|MSH2_RAT 14 928 + 915 Gaps:40 97.21 933 42.67 0.0 DNA mismatch repair protein Msh2 OS Rattus norvegicus GN Msh2 PE 2 SV 1
blastp_uniprot_sprot sp|O13396|MSH2_NEUCR 9 931 + 923 Gaps:64 98.29 937 43.32 0.0 DNA mismatch repair protein msh-2 OS Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN msh-2 PE 3 SV 1
blastp_uniprot_sprot sp|Q553L4|MSH2_DICDI 1 931 + 931 Gaps:114 99.79 937 40.21 0.0 DNA mismatch repair protein Msh2 OS Dictyostelium discoideum GN msh2 PE 3 SV 1
blastp_uniprot_sprot sp|P25847|MSH2_YEAST 9 904 + 896 Gaps:79 94.50 964 39.85 0.0 DNA mismatch repair protein MSH2 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN MSH2 PE 1 SV 2

19 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 469 566 98 PF05190 none MutS family domain IV IPR007861
PANTHER 6 932 927 PTHR11361:SF35 none none none
SUPERFAMILY 297 611 315 SSF48334 none none IPR007696
PIRSF 6 942 937 PIRSF005813 none none IPR011184
Coils 473 494 22 Coil none none none
Gene3D 616 861 246 G3DSA:3.40.50.300 none none IPR027417
SUPERFAMILY 616 862 247 SSF52540 none none IPR027417
Coils 911 935 25 Coil none none none
ProSitePatterns 740 756 17 PS00486 none DNA mismatch repair proteins mutS family signature. IPR000432
Coils 370 391 22 Coil none none none
SMART 314 642 329 SM00533 none DNA-binding domain of DNA mismatch repair MUTS family IPR007696
Coils 553 574 22 Coil none none none
SMART 659 858 200 SM00534 none ATPase domain of DNA mismatch repair MUTS family IPR000432
Pfam 616 862 247 PF00488 none MutS domain V IPR000432
PANTHER 6 932 927 PTHR11361 none none none
Pfam 299 607 309 PF05192 none MutS domain III IPR007696
Pfam 150 283 134 PF05188 none MutS domain II IPR007860
Pfam 23 128 106 PF01624 none MutS domain I IPR007695
Gene3D 293 491 199 G3DSA:1.10.1420.10 none none none

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran_2000_2002_QTL6_Delta.F Qrob_Chr03 3 s_2HYXJ2_207 s_1AUAXK_317 29.12 6,3 45,37 lod 3.1666 0.026
Bourran2_2014_nLBD_3P Qrob_Chr03 3 s_1ET7H8_604 s_1BYNB5_834 23,73 0 46,72 lod 1,7573 3,8
PM_1999_QTL14_peak_Bud_burst_3P Qrob_Chr03 3 s_2F0SI1_756 v_6056_735 11,78 3,78 50,78 lod 2,5 4,5
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_rEpiBC*_3P Qrob_Chr03 3 s_1A3B3X_1163 s_1DKGMO_450 23,04 4,92 41,12 lod 2,5668 7

0 Targeting