Protein : Qrob_P0499110.2 Q. robur
Protein Identifier  ? Qrob_P0499110.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=1) PTHR13803:SF4 - gb def: SED5-binding protein 3 (SEC24-related protein 3) (Lethal with SEC13 protein 1) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 224  
Kegg Orthology  K14007
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

3 GO Terms

Identifier Name Description
GO:0006886 intracellular protein transport The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
GO:0006888 ER to Golgi vesicle-mediated transport The directed movement of substances from the endoplasmic reticulum (ER) to the Golgi, mediated by COP II vesicles. Small COP II coated vesicles form from the ER and then fuse directly with the cis-Golgi. Larger structures are transported along microtubules to the cis-Golgi.
GO:0030127 COPII vesicle coat One of two multimeric complexes that forms a membrane vesicle coat. COPII is best characterized in S. cerevisiae, where the subunits are called Sar1p, Sec13p, Sec31p, Sec23p, and Sec24p. Vesicles with COPII coats are found associated with endoplasmic reticulum (ER) membranes at steady state.

31 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cic:CICLE_v10007324mg 8 223 + 216 Gaps:31 23.86 1035 63.56 1e-96 hypothetical protein
blastp_kegg lcl|cit:102619797 8 223 + 216 Gaps:31 23.86 1035 63.56 1e-96 protein transport protein Sec24-like At3g07100-like
blastp_kegg lcl|pmum:103344489 8 223 + 216 Gaps:31 23.35 1058 61.54 2e-93 protein transport protein Sec24-like At3g07100
blastp_kegg lcl|vvi:100252042 8 222 + 215 Gaps:35 23.00 1052 63.64 3e-92 protein transport protein Sec24-like At3g07100-like
blastp_kegg lcl|rcu:RCOM_0424000 8 222 + 215 Gaps:31 23.86 1031 61.79 4e-90 Protein transport protein Sec24A putative
blastp_kegg lcl|pxb:103928241 8 223 + 216 Gaps:31 23.37 1057 60.73 1e-89 protein transport protein Sec24-like At3g07100
blastp_kegg lcl|mdm:103450821 8 223 + 216 Gaps:31 23.37 1057 60.32 2e-89 protein transport protein Sec24-like At3g07100
blastp_kegg lcl|fve:101300468 8 223 + 216 Gaps:27 23.55 1032 60.49 5e-89 protein transport protein Sec24-like At3g07100-like
blastp_kegg lcl|tcc:TCM_030729 8 222 + 215 Gaps:37 23.65 1040 61.79 8e-89 Sec23/Sec24 protein transport family protein isoform 1
blastp_kegg lcl|csv:101223095 8 222 + 215 Gaps:32 23.96 1031 60.32 1e-88 protein transport protein Sec24-like At3g07100-like
blastp_pdb 2nut_B 8 221 + 214 Gaps:42 32.14 753 25.21 7e-10 mol:protein length:753 Protein transport protein Sec24A
blastp_pdb 2nup_B 8 221 + 214 Gaps:42 32.14 753 25.21 7e-10 mol:protein length:753 Protein transport protein Sec24A
blastp_pdb 3egx_B 8 221 + 214 Gaps:42 32.35 748 25.21 9e-10 mol:protein length:748 Protein transport protein Sec24A
blastp_pdb 3egd_B 8 221 + 214 Gaps:42 32.35 748 25.21 9e-10 mol:protein length:748 Protein transport protein Sec24A
blastp_pdb 3eh2_C 11 221 + 211 Gaps:40 30.42 766 23.61 4e-07 mol:protein length:766 Protein transport protein Sec24C
blastp_pdb 3eh2_B 11 221 + 211 Gaps:40 30.42 766 23.61 4e-07 mol:protein length:766 Protein transport protein Sec24C
blastp_pdb 3eh2_A 11 221 + 211 Gaps:40 30.42 766 23.61 4e-07 mol:protein length:766 Protein transport protein Sec24C
blastp_uniprot_sprot sp|Q9SFU0|SC24A_ARATH 8 222 + 215 Gaps:31 23.70 1038 56.50 5e-84 Protein transport protein Sec24-like At3g07100 OS Arabidopsis thaliana GN At3g07100 PE 2 SV 2
blastp_uniprot_sprot sp|Q9M291|SC24C_ARATH 6 221 + 216 Gaps:34 21.35 1096 28.21 7e-14 Protein transport protein Sec24-like CEF OS Arabidopsis thaliana GN CEF PE 2 SV 3
blastp_uniprot_sprot sp|Q9M081|SC24B_ARATH 6 220 + 215 Gaps:33 21.48 1080 26.29 2e-13 Protein transport protein Sec24-like At4g32640 OS Arabidopsis thaliana GN At4g32640 PE 2 SV 3
blastp_uniprot_sprot sp|Q1E6U9|SEC24_COCIM 6 179 + 174 Gaps:22 20.82 932 29.38 7e-11 Protein transport protein SEC24 OS Coccidioides immitis (strain RS) GN SEC24 PE 3 SV 2
blastp_uniprot_sprot sp|Q3U2P1|SC24A_MOUSE 8 221 + 214 Gaps:38 22.20 1090 25.62 2e-09 Protein transport protein Sec24A OS Mus musculus GN Sec24a PE 1 SV 1
blastp_uniprot_sprot sp|A2QSG6|SEC24_ASPNC 6 179 + 174 Gaps:22 21.11 919 27.32 3e-09 Protein transport protein sec24 OS Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN sec24 PE 3 SV 1
blastp_uniprot_sprot sp|O95486|SC24A_HUMAN 8 221 + 214 Gaps:42 22.14 1093 25.21 3e-09 Protein transport protein Sec24A OS Homo sapiens GN SEC24A PE 1 SV 2
blastp_uniprot_sprot sp|A1DP06|SEC24_NEOFI 6 179 + 174 Gaps:22 21.11 919 27.32 3e-09 Protein transport protein SEC24 OS Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN sec24 PE 3 SV 1
blastp_uniprot_sprot sp|A1CUC3|SEC24_ASPCL 6 179 + 174 Gaps:22 21.11 919 27.84 4e-09 Protein transport protein sec24 OS Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN sec24 PE 3 SV 1
blastp_uniprot_sprot sp|Q2ULI0|SEC24_ASPOR 6 179 + 174 Gaps:22 21.25 913 27.32 4e-09 Protein transport protein sec24 OS Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN sec24 PE 3 SV 1
rpsblast_cdd gnl|CDD|34633 8 220 + 213 Gaps:36 28.22 861 25.93 8e-16 COG5028 COG5028 Vesicle coat complex COPII subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion].
rpsblast_cdd gnl|CDD|203093 6 92 + 87 Gaps:3 81.55 103 41.67 4e-12 pfam04815 Sec23_helical Sec23/Sec24 helical domain. COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p the Sec23p/24p complex and the Sec13p/Sec31p complex. This domain is composed of five alpha helices.
rpsblast_kog gnl|CDD|37196 8 221 + 214 Gaps:36 27.73 887 30.08 1e-38 KOG1985 KOG1985 KOG1985 Vesicle coat complex COPII subunit SEC24/subunit SFB2 [Intracellular trafficking secretion and vesicular transport].

6 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 99 216 118 G3DSA:3.40.20.10 none none IPR029006
PANTHER 7 222 216 PTHR13803 none none none
SUPERFAMILY 102 221 120 SSF82754 none none none
Pfam 6 96 91 PF04815 "Reactome:REACT_11123" Sec23/Sec24 helical domain IPR006900
PANTHER 7 222 216 PTHR13803:SF4 none none none
SUPERFAMILY 7 96 90 SSF81811 "Reactome:REACT_11123" none IPR006900

0 Localization

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran_2000_2002_QTL6_Delta.F Qrob_Chr03 3 s_2HYXJ2_207 s_1AUAXK_317 29.12 6,3 45,37 lod 3.1666 0.026
Bourran2_2014_nLBD_3P Qrob_Chr03 3 s_1ET7H8_604 s_1BYNB5_834 23,73 0 46,72 lod 1,7573 3,8
PM_1999_QTL14_peak_Bud_burst_3P Qrob_Chr03 3 s_2F0SI1_756 v_6056_735 11,78 3,78 50,78 lod 2,5 4,5
Bourran2_2014_rEpiBC*_3P Qrob_Chr03 3 s_1A3B3X_1163 s_1DKGMO_450 23,04 4,92 41,12 lod 2,5668 7

0 Targeting