Protein : Qrob_P0499020.2 Q. robur
Protein Identifier  ? Qrob_P0499020.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) K06634 - cyclin H Gene Prediction Quality  validated
Protein length 

Sequence

Length: 289  
Kegg Orthology  K06634
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0 Synonyms

6 GO Terms

Identifier Name Description
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity Any process that modulates the frequency, rate or extent of cyclin-dependent protein serine/threonine kinase activity.
GO:0019901 protein kinase binding Interacting selectively and non-covalently with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate.
GO:0006351 transcription, DNA-templated The cellular synthesis of RNA on a template of DNA.
GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity Modulates the activity of a cyclin-dependent protein serine/threonine kinase, enzymes of the protein kinase family that are regulated through association with cyclins and other proteins.
GO:0070985 TFIIK complex A transcription factor complex that forms part of the holo TFIIH complex. In Saccharomyces/human, TFIIK contains Ccl1p/Cyclin H, Tfb3p/MAT1 and Kin2p/CDK7.

30 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa008262mg 1 264 + 264 none 77.88 339 84.85 3e-170 hypothetical protein
blastp_kegg lcl|pmum:103344576 1 264 + 264 Gaps:3 79.23 337 84.27 2e-168 cyclin-H1-1
blastp_kegg lcl|tcc:TCM_026625 1 265 + 265 Gaps:5 62.44 426 80.45 1e-155 Cyclin H 1 isoform 2
blastp_kegg lcl|gmx:547736 1 264 + 264 Gaps:3 79.70 335 78.65 4e-154 cyclin H
blastp_kegg lcl|mdm:103423557 1 264 + 264 Gaps:12 78.66 328 82.56 3e-153 cyclin-H1-1-like
blastp_kegg lcl|cic:CICLE_v10001764mg 1 263 + 263 Gaps:3 80.36 331 76.32 3e-151 hypothetical protein
blastp_kegg lcl|gmx:100800023 1 264 + 264 Gaps:3 79.70 335 76.78 1e-150 cyclin-H1-1-like
blastp_kegg lcl|csv:101220754 1 263 + 263 Gaps:6 79.22 332 79.85 3e-150 cyclin-H1-1-like
blastp_kegg lcl|cit:102628605 1 263 + 263 Gaps:9 80.71 337 74.63 5e-149 cyclin-H1-1-like
blastp_kegg lcl|cmo:103484743 1 263 + 263 Gaps:6 79.22 332 79.47 8e-149 cyclin-H1-1
blastp_pdb 1kxu_A 35 256 + 222 Gaps:17 68.77 333 34.50 3e-31 mol:protein length:333 CYCLIN H
blastp_pdb 1jkw_A 35 256 + 222 Gaps:17 70.90 323 34.50 4e-31 mol:protein length:323 CYCLIN H
blastp_pdb 3rgf_B 29 200 + 172 Gaps:35 63.51 285 31.49 3e-11 mol:protein length:285 Cyclin-C
blastp_uniprot_sprot sp|Q8W5S1|CCH11_ARATH 1 264 + 264 Gaps:6 79.17 336 65.79 4e-122 Cyclin-H1-1 OS Arabidopsis thaliana GN CYCH1-1 PE 1 SV 1
blastp_uniprot_sprot sp|Q10D80|CCH11_ORYSJ 1 263 + 263 Gaps:7 80.00 330 63.64 2e-115 Cyclin-H1-1 OS Oryza sativa subsp. japonica GN CYCH1-1 PE 1 SV 1
blastp_uniprot_sprot sp|P51946|CCNH_HUMAN 35 256 + 222 Gaps:17 70.90 323 34.50 9e-31 Cyclin-H OS Homo sapiens GN CCNH PE 1 SV 1
blastp_uniprot_sprot sp|Q4R7U4|CCNH_MACFA 35 256 + 222 Gaps:17 70.90 323 34.50 9e-31 Cyclin-H OS Macaca fascicularis GN CCNH PE 2 SV 1
blastp_uniprot_sprot sp|Q3ZBL9|CCNH_BOVIN 35 256 + 222 Gaps:17 71.56 320 34.06 1e-30 Cyclin-H OS Bos taurus GN CCNH PE 2 SV 1
blastp_uniprot_sprot sp|P51947|CCNH_XENLA 35 256 + 222 Gaps:17 70.90 323 33.62 1e-30 Cyclin-H OS Xenopus laevis GN ccnh PE 1 SV 1
blastp_uniprot_sprot sp|Q9R1A0|CCNH_RAT 30 256 + 227 Gaps:19 73.07 323 34.75 2e-30 Cyclin-H OS Rattus norvegicus GN Ccnh PE 2 SV 2
blastp_uniprot_sprot sp|Q61458|CCNH_MOUSE 35 256 + 222 Gaps:17 70.90 323 34.50 7e-30 Cyclin-H OS Mus musculus GN Ccnh PE 2 SV 2
blastp_uniprot_sprot sp|Q55F19|CCNH_DICDI 26 193 + 168 Gaps:7 61.19 286 33.14 1e-23 Putative cyclin-H OS Dictyostelium discoideum GN cycH PE 3 SV 1
blastp_uniprot_sprot sp|P37366|CCL1_YEAST 30 221 + 192 Gaps:9 48.60 393 32.98 1e-21 Cyclin CCL1 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN CCL1 PE 1 SV 1
rpsblast_cdd gnl|CDD|129660 26 256 + 231 Gaps:14 77.05 305 33.62 9e-35 TIGR00569 ccl1 cyclin ccl1. All proteins in this family for which functions are known are cyclins that are components of TFIIH a complex that is involved in nucleotide excision repair and transcription initiation. This family is based on the phylogenomic analysis of JA Eisen (1999 Ph.D. Thesis StanfordUniversity).
rpsblast_cdd gnl|CDD|34912 26 199 + 174 Gaps:20 59.26 297 31.25 1e-15 COG5333 CCL1 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication recombination and repair].
rpsblast_cdd gnl|CDD|197692 47 126 + 80 Gaps:1 97.59 83 23.46 1e-09 smart00385 CYCLIN domain present in cyclins TFIIB and Retinoblastoma. A helical domain present in cyclins and TFIIB (twice) and Retinoblastoma (once). A protein recognition domain functioning in cell-cycle and transcription control.
rpsblast_cdd gnl|CDD|28924 39 105 + 67 none 76.14 88 23.88 4e-09 cd00043 CYCLIN Cyclin box fold. Protein binding domain functioning in cell-cycle and transcription control. Present in cyclins TFIIB and Retinoblastoma (RB).The cyclins consist of 8 classes of cell cycle regulators that regulate cyclin dependent kinases (CDKs). TFIIB is a transcription factor that binds the TATA box. Cyclins TFIIB and RB contain 2 copies of the domain..
rpsblast_kog gnl|CDD|37707 31 264 + 234 Gaps:13 74.15 325 34.85 3e-48 KOG2496 KOG2496 KOG2496 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK cyclin H subunit [Cell cycle control cell division chromosome partitioning Transcription Replication recombination and repair].
rpsblast_kog gnl|CDD|36013 29 199 + 171 Gaps:28 67.80 264 29.61 8e-15 KOG0794 KOG0794 KOG0794 CDK8 kinase-activating protein cyclin C [Transcription].
rpsblast_kog gnl|CDD|36052 26 201 + 176 Gaps:25 57.89 323 21.93 7e-12 KOG0834 KOG0834 KOG0834 CDK9 kinase-activating protein cyclin T [Cell cycle control cell division chromosome partitioning].

7 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SMART 45 126 82 SM00385 none domain present in cyclins, TFIIB and Retinoblastoma IPR013763
Gene3D 22 164 143 G3DSA:1.10.472.10 none none IPR013763
PANTHER 31 243 213 PTHR10026:SF8 none none IPR027081
SUPERFAMILY 25 131 107 SSF47954 none none IPR013763
PANTHER 31 243 213 PTHR10026 none none IPR015429
SUPERFAMILY 134 258 125 SSF47954 none none IPR013763
Pfam 28 107 80 PF00134 none Cyclin, N-terminal domain IPR006671

0 Localization

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran_2000_2002_QTL6_Delta.F Qrob_Chr03 3 s_2HYXJ2_207 s_1AUAXK_317 29.12 6,3 45,37 lod 3.1666 0.026
Bourran2_2014_nLBD_3P Qrob_Chr03 3 s_1ET7H8_604 s_1BYNB5_834 23,73 0 46,72 lod 1,7573 3,8
PM_1999_QTL14_peak_Bud_burst_3P Qrob_Chr03 3 s_2F0SI1_756 v_6056_735 11,78 3,78 50,78 lod 2,5 4,5
Bourran2_2014_rEpiBC*_3P Qrob_Chr03 3 s_1A3B3X_1163 s_1DKGMO_450 23,04 4,92 41,12 lod 2,5668 7

0 Targeting