Protein : Qrob_P0497770.2 Q. robur
Protein Identifier  ? Qrob_P0497770.2 Organism . Name  Quercus robur
Score  89.1 Score Type  egn
Protein Description  (M=1) K15292 - syntaxin-binding protein 1 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 496  
Kegg Orthology  K15292
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0016192 vesicle-mediated transport A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane.
GO:0006904 vesicle docking involved in exocytosis The initial attachment of a vesicle membrane to a target membrane, mediated by proteins protruding from the membrane of the vesicle and the target membrane, that contributes to exocytosis.

35 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cmo:103499028 1 476 + 476 Gaps:25 74.11 672 74.70 4e-161 protein transport Sec1a-like
blastp_kegg lcl|vvi:100248925 1 476 + 476 Gaps:26 73.98 665 74.59 2e-156 protein transport Sec1a-like
blastp_kegg lcl|csv:101211306 12 476 + 465 Gaps:21 72.47 672 73.51 1e-154 protein transport Sec1a-like
blastp_kegg lcl|csv:101221314 12 476 + 465 Gaps:21 72.47 672 73.51 1e-154 protein transport Sec1a-like
blastp_kegg lcl|csv:101227346 12 476 + 465 Gaps:21 71.41 682 73.51 2e-154 protein transport Sec1a-like
blastp_kegg lcl|rcu:RCOM_1612150 11 476 + 466 Gaps:27 72.34 676 75.05 4e-153 plant sec1 putative
blastp_kegg lcl|pxb:103930497 11 476 + 466 Gaps:20 72.35 669 74.38 2e-151 protein transport Sec1a
blastp_kegg lcl|cic:CICLE_v10023931mg 1 476 + 476 Gaps:30 74.70 664 70.97 3e-151 hypothetical protein
blastp_kegg lcl|cit:102621253 1 476 + 476 Gaps:30 74.70 664 70.97 3e-151 protein transport Sec1a-like
blastp_kegg lcl|mdm:103455414 11 476 + 466 Gaps:20 72.35 669 73.76 4e-150 protein transport Sec1a
blastp_pdb 1fvh_A 25 466 + 442 Gaps:91 68.87 591 33.42 5e-35 mol:protein length:591 SEC1
blastp_pdb 1fvf_B 25 466 + 442 Gaps:91 68.87 591 33.42 5e-35 mol:protein length:591 SEC1
blastp_pdb 1fvf_A 25 466 + 442 Gaps:91 68.87 591 33.42 5e-35 mol:protein length:591 SEC1
blastp_pdb 1epu_A 25 466 + 442 Gaps:91 68.87 591 33.42 5e-35 mol:protein length:591 S-SEC1
blastp_pdb 3c98_A 13 476 + 464 Gaps:92 70.13 606 31.76 2e-34 mol:protein length:606 Syntaxin-binding protein 1
blastp_pdb 3puj_B 19 476 + 458 Gaps:92 70.54 594 31.74 4e-34 mol:protein length:594 Syntaxin-binding protein 1
blastp_pdb 3puj_A 19 476 + 458 Gaps:92 70.54 594 31.74 4e-34 mol:protein length:594 Syntaxin-binding protein 1
blastp_pdb 3puk_B 45 277 + 233 Gaps:32 40.71 592 31.12 1e-29 mol:protein length:592 Syntaxin-binding protein 3
blastp_pdb 3puk_A 45 277 + 233 Gaps:32 40.71 592 31.12 1e-29 mol:protein length:592 Syntaxin-binding protein 3
blastp_pdb 2pjx_B 45 277 + 233 Gaps:32 40.71 592 31.12 1e-29 mol:protein length:592 Syntaxin-binding protein 3
blastp_uniprot_sprot sp|Q9C5X3|KEULE_ARATH 11 476 + 466 Gaps:23 71.92 666 68.27 4e-142 SNARE-interacting protein KEULE OS Arabidopsis thaliana GN KEU PE 1 SV 2
blastp_uniprot_sprot sp|Q9C5P7|SEC1A_ARATH 16 476 + 461 Gaps:31 71.03 673 70.50 5e-137 Protein transport Sec1a OS Arabidopsis thaliana GN SEC1A PE 2 SV 3
blastp_uniprot_sprot sp|Q7XWP3|SEC1A_ORYSJ 5 476 + 472 Gaps:26 76.24 665 59.57 4e-121 Probable protein transport Sec1a OS Oryza sativa subsp. japonica GN Os04g0252400 PE 3 SV 2
blastp_uniprot_sprot sp|Q9SZ77|SEC1B_ARATH 16 476 + 461 Gaps:30 71.45 662 61.10 2e-115 Protein transport Sec1b OS Arabidopsis thaliana GN SEC1B PE 2 SV 3
blastp_uniprot_sprot sp|Q5VNU3|SEC1B_ORYSJ 1 476 + 476 Gaps:25 76.48 659 57.34 1e-113 Probable protein transport Sec1b OS Oryza sativa subsp. japonica GN Os06g0135900 PE 2 SV 1
blastp_uniprot_sprot sp|Q64324|STXB2_MOUSE 19 476 + 458 Gaps:90 69.31 593 31.63 1e-36 Syntaxin-binding protein 2 OS Mus musculus GN Stxbp2 PE 2 SV 1
blastp_uniprot_sprot sp|Q15833|STXB2_HUMAN 19 476 + 458 Gaps:84 69.31 593 30.66 4e-36 Syntaxin-binding protein 2 OS Homo sapiens GN STXBP2 PE 1 SV 2
blastp_uniprot_sprot sp|Q28288|STXB2_CANFA 19 277 + 259 Gaps:44 44.35 593 31.94 5e-36 Syntaxin-binding protein 2 OS Canis familiaris GN STXBP2 PE 2 SV 1
blastp_uniprot_sprot sp|Q62753|STXB2_RAT 19 277 + 259 Gaps:38 44.28 594 30.80 5e-35 Syntaxin-binding protein 2 OS Rattus norvegicus GN Stxbp2 PE 2 SV 1
blastp_uniprot_sprot sp|P34815|UNC18_CAEEL 27 476 + 450 Gaps:67 57.36 673 33.42 6e-34 Putative acetylcholine regulator unc-18 OS Caenorhabditis elegans GN unc-18 PE 2 SV 3

15 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 427 474 48 G3DSA:3.40.50.1910 none none IPR027482
Gene3D 136 276 141 G3DSA:3.40.50.1910 none none IPR027482
SUPERFAMILY 19 277 259 SSF56815 none none IPR001619
Phobius 490 495 6 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 414 479 66 PTHR11679 none none IPR001619
PANTHER 16 387 372 PTHR11679 none none IPR001619
Phobius 1 466 466 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 414 479 66 PTHR11679:SF30 none none none
PANTHER 16 387 372 PTHR11679:SF30 none none none
Phobius 467 489 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Pfam 45 277 233 PF00995 none Sec1 family IPR001619
Pfam 279 467 189 PF00995 none Sec1 family IPR001619
SUPERFAMILY 278 473 196 SSF56815 none none IPR001619
Gene3D 15 135 121 G3DSA:3.40.50.2060 none none none
Gene3D 277 337 61 G3DSA:1.25.40.60 none none none

1 Localization

Analysis Start End Length
TMHMM 467 489 22

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04

0 Targeting