Protein : Qrob_P0496510.2 Q. robur
Protein Identifier  ? Qrob_P0496510.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) K03254 - translation initiation factor eIF-3 subunit 10 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 976  
Kegg Orthology  K03254
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0005852 eukaryotic translation initiation factor 3 complex A complex of several polypeptides that plays at least two important roles in protein synthesis: First, eIF3 binds to the 40S ribosome and facilitates loading of the Met-tRNA/eIF2.GTP ternary complex to form the 43S preinitiation complex. Subsequently, eIF3 apparently assists eIF4 in recruiting mRNAs to the 43S complex. The eIF3 complex contains five conserved core subunits, and may contain several additional proteins; the non-core subunits are thought to mediate association of the complex with specific sets of mRNAs.

38 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100244162 1 944 + 944 Gaps:17 97.75 977 81.15 0.0 eukaryotic translation initiation factor 3 subunit A-like
blastp_kegg lcl|gmx:100803796 1 948 + 948 Gaps:16 97.91 958 79.96 0.0 eukaryotic translation initiation factor 3 subunit A-like
blastp_kegg lcl|gmx:100782598 1 948 + 948 Gaps:17 97.91 957 80.04 0.0 eukaryotic translation initiation factor 3 subunit A-like
blastp_kegg lcl|pvu:PHAVU_001G169900g 1 948 + 948 Gaps:13 98.01 954 80.11 0.0 hypothetical protein
blastp_kegg lcl|pmum:103343795 1 975 + 975 Gaps:18 100.00 957 79.31 0.0 eukaryotic translation initiation factor 3 subunit A
blastp_kegg lcl|tcc:TCM_026722 1 972 + 972 Gaps:24 100.00 980 75.61 0.0 Eukaryotic translation initiation factor 3 subunit A
blastp_kegg lcl|rcu:RCOM_1434190 1 967 + 967 Gaps:42 99.90 994 74.42 0.0 Eukaryotic translation initiation factor 3 subunit putative
blastp_kegg lcl|mdm:103450881 1 971 + 971 Gaps:28 100.00 951 78.34 0.0 eukaryotic translation initiation factor 3 subunit A-like
blastp_kegg lcl|mtr:MTR_7g099920 1 940 + 940 Gaps:17 97.08 959 77.98 0.0 Eukaryotic translation initiation factor 3 subunit A
blastp_kegg lcl|csv:101230443 1 950 + 950 Gaps:11 98.25 970 76.81 0.0 eukaryotic translation initiation factor 3 subunit A-like
blastp_uniprot_sprot sp|Q40554|EIF3A_TOBAC 1 967 + 967 Gaps:16 99.90 958 74.19 0.0 Eukaryotic translation initiation factor 3 subunit A OS Nicotiana tabacum GN TIF3A1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LD55|EIF3A_ARATH 1 967 + 967 Gaps:18 99.39 987 70.34 0.0 Eukaryotic translation initiation factor 3 subunit A OS Arabidopsis thaliana GN TIF3A1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9XHR2|EIF3A_MAIZE 1 969 + 969 Gaps:54 98.44 962 66.95 0.0 Eukaryotic translation initiation factor 3 subunit A OS Zea mays GN TIF3A1 PE 2 SV 1
blastp_uniprot_sprot sp|Q6PCR7|EIF3A_DANRE 4 811 + 808 Gaps:53 64.48 1267 38.56 1e-157 Eukaryotic translation initiation factor 3 subunit A OS Danio rerio GN eif3a PE 2 SV 1
blastp_uniprot_sprot sp|A4II09|EIF3A_XENTR 4 843 + 840 Gaps:64 61.39 1391 38.06 2e-157 Eukaryotic translation initiation factor 3 subunit A OS Xenopus tropicalis GN eif3a PE 2 SV 1
blastp_uniprot_sprot sp|Q1DXU0|EIF3A_COCIM 6 911 + 906 Gaps:153 94.36 1029 36.05 5e-156 Eukaryotic translation initiation factor 3 subunit A OS Coccidioides immitis (strain RS) GN TIF32 PE 3 SV 2
blastp_uniprot_sprot sp|P23116|EIF3A_MOUSE 4 792 + 789 Gaps:58 59.15 1344 38.87 1e-155 Eukaryotic translation initiation factor 3 subunit A OS Mus musculus GN Eif3a PE 1 SV 5
blastp_uniprot_sprot sp|Q1JU68|EIF3A_RAT 4 792 + 789 Gaps:58 58.71 1354 38.87 2e-155 Eukaryotic translation initiation factor 3 subunit A OS Rattus norvegicus GN Eif3a PE 2 SV 2
blastp_uniprot_sprot sp|A2VD00|EIF3A_XENLA 4 843 + 840 Gaps:66 59.97 1424 37.59 1e-154 Eukaryotic translation initiation factor 3 subunit A OS Xenopus laevis GN eif3a PE 2 SV 1
blastp_uniprot_sprot sp|Q14152|EIF3A_HUMAN 4 778 + 775 Gaps:56 56.51 1382 38.80 3e-153 Eukaryotic translation initiation factor 3 subunit A OS Homo sapiens GN EIF3A PE 1 SV 1
rpsblast_cdd gnl|CDD|173412 543 871 + 329 Gaps:283 34.02 2084 63.47 1e-13 PTZ00121 PTZ00121 MAEBL Provisional.
rpsblast_cdd gnl|CDD|162740 553 882 + 330 Gaps:129 54.30 1164 37.97 1e-10 TIGR02169 SMC_prok_A chromosome segregation protein SMC primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria archaea and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes but six paralogs (excluded from this family) are found in eukarotes where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex Synechocystis etc) the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved but the central hinge region is skewed in composition and highly divergent.
rpsblast_cdd gnl|CDD|202246 553 864 + 312 Gaps:46 52.58 1162 23.24 2e-09 pfam02463 SMC_N RecF/RecN/SMC N terminal domain. This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
rpsblast_cdd gnl|CDD|162739 562 858 + 297 Gaps:66 48.26 1179 21.62 4e-09 TIGR02168 SMC_prok_B chromosome segregation protein SMC common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria archaea and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
rpsblast_cdd gnl|CDD|206039 582 850 + 269 Gaps:6 75.36 349 21.29 6e-09 pfam13868 Trichoplein Tumour suppressor Mitostatin. Trichoplein or mitostatin was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs).
rpsblast_cdd gnl|CDD|31389 540 858 + 319 Gaps:47 56.32 1163 28.40 3e-08 COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning].
rpsblast_cdd gnl|CDD|179675 559 848 + 290 Gaps:18 35.00 880 22.08 1e-07 PRK03918 PRK03918 chromosome segregation protein Provisional.
rpsblast_cdd gnl|CDD|30768 567 856 + 290 Gaps:5 32.49 908 20.00 1e-06 COG0419 SbcC ATPase involved in DNA repair [DNA replication recombination and repair].
rpsblast_kog gnl|CDD|37283 4 948 + 945 Gaps:61 96.96 988 43.74 0.0 KOG2072 KOG2072 KOG2072 Translation initiation factor 3 subunit a (eIF-3a) [Translation ribosomal structure and biogenesis].
rpsblast_kog gnl|CDD|35383 509 861 + 353 Gaps:178 43.16 1930 41.30 2e-09 KOG0161 KOG0161 KOG0161 Myosin class II heavy chain [Cytoskeleton].

16 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 304 314 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Coils 667 698 32 Coil none none none
Phobius 334 975 642 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 315 333 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 1 975 975 PTHR14005:SF0 none none IPR027512
Gene3D 452 512 61 G3DSA:1.10.10.10 none none IPR011991
SMART 441 532 92 SM00088 none motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 IPR000717
Coils 566 594 29 Coil none none none
Coils 596 643 48 Coil none none none
Coils 796 857 62 Coil none none none
Hamap 1 958 958 MF_03000 none Eukaryotic translation initiation factor 3 subunit A [EIF3A]. IPR027512
Pfam 373 509 137 PF01399 none PCI domain IPR000717
Coils 93 121 29 Coil none none none
PANTHER 1 975 975 PTHR14005 none none none
Phobius 1 282 282 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 283 303 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none

0 Localization

0 Qtllist

0 Targeting