Protein : Qrob_P0492930.2 Q. robur
Protein Identifier  ? Qrob_P0492930.2 Organism . Name  Quercus robur
Score  84.3 Score Type  egn
Protein Description  (M=3) 2.1.1.226 - 23S rRNA (cytidine(1920)-2'-O)-methyltransferase. Code Enzyme  EC:2.1.1.227, EC:2.1.1.226
Gene Prediction Quality  validated Protein length 

Sequence

Length: 220  
Kegg Orthology  K06442
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0003723 RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO:0008168 methyltransferase activity Catalysis of the transfer of a methyl group to an acceptor molecule.
GO:0032259 methylation The process in which a methyl group is covalently attached to a molecule.

20 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|rcu:RCOM_1628240 2 217 + 216 none 69.23 312 84.72 3e-131 Hemolysin A putative
blastp_kegg lcl|tcc:TCM_002613 8 217 + 210 none 72.41 290 87.62 3e-130 Bacterial hemolysin-related isoform 1
blastp_kegg lcl|vvi:100254915 6 217 + 212 none 70.67 300 84.91 3e-129 uncharacterized LOC100254915
blastp_kegg lcl|pop:POPTR_0014s17390g 13 217 + 205 Gaps:2 86.97 238 88.41 6e-129 POPTRDRAFT_573182 hypothetical protein
blastp_kegg lcl|pvu:PHAVU_010G036400g 2 217 + 216 none 69.01 313 81.94 1e-125 hypothetical protein
blastp_kegg lcl|cit:102609926 1 217 + 217 Gaps:3 69.62 316 81.82 8e-124 uncharacterized LOC102609926
blastp_kegg lcl|pxb:103934372 5 217 + 213 Gaps:3 63.83 329 84.29 1e-123 uncharacterized LOC103934372
blastp_kegg lcl|pxb:103934359 5 217 + 213 Gaps:3 63.83 329 84.29 1e-123 uncharacterized LOC103934359
blastp_kegg lcl|cam:101498329 4 217 + 214 Gaps:2 69.68 310 80.56 8e-123 putative rRNA methyltransferase YqxC-like
blastp_kegg lcl|mdm:103445327 2 217 + 216 Gaps:3 64.74 329 81.69 4e-122 uncharacterized LOC103445327
blastp_pdb 3opn_A 80 217 + 138 Gaps:3 60.78 232 43.26 1e-32 mol:protein length:232 putative hemolysin
blastp_pdb 3hp7_A 32 217 + 186 Gaps:11 65.64 291 36.13 2e-31 mol:protein length:291 Hemolysin putative
blastp_uniprot_sprot sp|Q50760|TLYA_MYCTU 31 217 + 187 Gaps:3 70.90 268 42.11 2e-39 16S/23S rRNA (cytidine-2'-O)-methyltransferase TlyA OS Mycobacterium tuberculosis GN tlyA PE 1 SV 2
blastp_uniprot_sprot sp|P19672|YQXC_BACSU 31 217 + 187 Gaps:9 67.62 281 40.00 5e-37 Putative rRNA methyltransferase YqxC OS Bacillus subtilis (strain 168) GN yqxC PE 3 SV 3
blastp_uniprot_sprot sp|Q06803|HLYA_BRAHO 34 217 + 184 Gaps:10 77.50 240 41.40 6e-35 Hemolysin A OS Brachyspira hyodysenteriae GN tlyA PE 2 SV 1
blastp_uniprot_sprot sp|Q8DEV0|RLUD_VIBVU 33 86 + 54 none 16.62 325 42.59 3e-06 Ribosomal large subunit pseudouridine synthase D OS Vibrio vulnificus (strain CMCP6) GN rluD PE 3 SV 1
rpsblast_cdd gnl|CDD|31382 31 218 + 188 Gaps:2 77.55 245 48.42 7e-52 COG1189 COG1189 Predicted rRNA methylase [Translation ribosomal structure and biogenesis].
rpsblast_cdd gnl|CDD|129570 34 214 + 181 Gaps:2 78.51 228 46.37 4e-42 TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
rpsblast_cdd gnl|CDD|201939 89 206 + 118 Gaps:24 75.71 177 36.57 1e-19 pfam01728 FtsJ FtsJ-like methyltransferase. This family consists of FtsJ from various bacterial and archaeal sources FtsJ is a methyltransferase but actually has no effect on cell division. FtsJ's substrate is the 23S rRNA. The 1.5 A crystal structure of FtsJ in complex with its cofactor S-adenosylmethionine revealed that FtsJ has a methyltransferase fold. This family also includes the N terminus of flaviviral NS5 protein. It has been hypothesised that the N-terminal domain of NS5 is a methyltransferase involved in viral RNA capping.
rpsblast_cdd gnl|CDD|183020 34 86 + 53 none 16.31 325 47.17 1e-08 PRK11180 rluD 23S rRNA pseudouridine synthase D Provisional.

13 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SMART 33 98 66 SM00363 none S4 RNA-binding domain IPR002942
PANTHER 25 218 194 PTHR32319:SF0 none none none
SUPERFAMILY 32 85 54 SSF55174 none none none
Pfam 89 205 117 PF01728 none FtsJ-like methyltransferase IPR002877
Phobius 173 193 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Gene3D 121 204 84 G3DSA:3.40.50.150 none none IPR029063
Pfam 33 80 48 PF01479 none S4 domain IPR002942
SUPERFAMILY 80 213 134 SSF53335 none none IPR029063
Gene3D 32 120 89 G3DSA:3.10.290.10 none none IPR002942
Phobius 194 219 26 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
ProSiteProfiles 33 93 61 PS50889 none S4 RNA-binding domain profile. IPR002942
Phobius 1 172 172 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 25 218 194 PTHR32319 none none none

0 Localization

0 Qtllist

0 Targeting