Protein : Qrob_P0489830.2 Q. robur
Protein Identifier  ? Qrob_P0489830.2 Organism . Name  Quercus robur
Score  4.0 Score Type  egn
Protein Description  (M=4) K01873 - valyl-tRNA synthetase [EC:6.1.1.9] Code Enzyme  EC:6.1.1.9
Gene Prediction Quality  validated Protein length 

Sequence

Length: 377  
Kegg Orthology  K01873
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0 Synonyms

7 GO Terms

Identifier Name Description
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0000166 nucleotide binding Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO:0004812 aminoacyl-tRNA ligase activity Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP.
GO:0006418 tRNA aminoacylation for protein translation The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis.
GO:0002161 aminoacyl-tRNA editing activity The hydrolysis of an incorrectly aminoacylated tRNA.
GO:0004832 valine-tRNA ligase activity Catalysis of the reaction: L-valine + ATP + tRNA(Val) = L-valyl-tRNA(Val) + AMP + diphosphate + 2 H(+).
GO:0006438 valyl-tRNA aminoacylation The process of coupling valine to valyl-tRNA, catalyzed by valyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA.

44 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|csv:101207263 4 370 + 367 Gaps:1 39.65 923 92.35 0.0 valine--tRNA ligase-like
blastp_kegg lcl|cmo:103496791 4 370 + 367 none 37.87 969 91.55 0.0 valine--tRNA ligase
blastp_kegg lcl|rcu:RCOM_0013150 4 370 + 367 none 52.88 694 90.19 0.0 valyl-tRNA synthetase putative (EC:6.1.1.9)
blastp_kegg lcl|pop:POPTR_0005s14610g 4 370 + 367 Gaps:2 37.55 972 90.96 0.0 hypothetical protein
blastp_kegg lcl|tcc:TCM_019154 4 370 + 367 none 37.80 971 90.74 0.0 ATP binding valine-tRNA ligase isoform 1
blastp_kegg lcl|vvi:100260814 4 370 + 367 none 38.27 959 89.92 0.0 valyl-tRNA synthetase-like
blastp_kegg lcl|cam:101492931 4 370 + 367 none 37.68 974 89.37 0.0 valine--tRNA ligase-like
blastp_kegg lcl|pmum:103328579 4 370 + 367 none 37.91 968 90.46 0.0 valine--tRNA ligase mitochondrial
blastp_kegg lcl|vvi:100253666 4 370 + 367 Gaps:1 38.20 958 89.34 0.0 valyl-tRNA synthetase-like
blastp_kegg lcl|mdm:103444347 4 370 + 367 none 36.59 1003 89.37 0.0 valine--tRNA ligase mitochondrial
blastp_pdb 1iyw_B 4 370 + 367 Gaps:24 41.88 862 47.37 6e-102 mol:protein length:862 Valyl-tRNA Synthetase
blastp_pdb 1iyw_A 4 370 + 367 Gaps:24 41.88 862 47.37 6e-102 mol:protein length:862 Valyl-tRNA Synthetase
blastp_pdb 1ivs_B 4 370 + 367 Gaps:24 41.88 862 47.37 6e-102 mol:protein length:862 Valyl-tRNA synthetase
blastp_pdb 1ivs_A 4 370 + 367 Gaps:24 41.88 862 47.37 6e-102 mol:protein length:862 Valyl-tRNA synthetase
blastp_pdb 1gax_B 4 370 + 367 Gaps:24 41.88 862 47.37 6e-102 mol:protein length:862 VALYL-TRNA SYNTHETASE
blastp_pdb 1gax_A 4 370 + 367 Gaps:24 41.88 862 47.37 6e-102 mol:protein length:862 VALYL-TRNA SYNTHETASE
blastp_pdb 1wka_A 34 179 + 146 Gaps:6 97.96 147 46.53 2e-32 mol:protein length:147 Valyl-tRNA synthetase
blastp_pdb 1wk9_A 34 176 + 143 Gaps:6 96.58 146 46.81 6e-32 mol:protein length:146 Valyl-tRNA synthetase
blastp_pdb 1jzs_A 4 370 + 367 Gaps:70 51.04 821 26.01 3e-28 mol:protein length:821 Isoleucyl-tRNA synthetase
blastp_pdb 1jzq_A 4 370 + 367 Gaps:70 51.04 821 26.01 3e-28 mol:protein length:821 Isoleucyl-tRNA synthetase
blastp_uniprot_sprot sp|Q7TUI9|SYV_PROMM 4 370 + 367 Gaps:9 40.26 929 53.74 6e-140 Valine--tRNA ligase OS Prochlorococcus marinus (strain MIT 9313) GN valS PE 3 SV 2
blastp_uniprot_sprot sp|Q7UZI3|SYV_PROMP 4 370 + 367 Gaps:9 40.74 918 53.21 2e-139 Valine--tRNA ligase OS Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN valS PE 3 SV 1
blastp_uniprot_sprot sp|Q46IA7|SYV_PROMT 4 370 + 367 Gaps:11 40.30 933 53.46 9e-137 Valine--tRNA ligase OS Prochlorococcus marinus (strain NATL2A) GN valS PE 3 SV 1
blastp_uniprot_sprot sp|Q83DD0|SYV_COXBU 4 370 + 367 Gaps:11 38.91 920 58.66 3e-136 Valine--tRNA ligase OS Coxiella burnetii (strain RSA 493 / Nine Mile phase I) GN valS PE 3 SV 1
blastp_uniprot_sprot sp|Q8RBN5|SYV_THETN 4 369 + 366 Gaps:12 40.27 879 55.08 7e-135 Valine--tRNA ligase OS Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN valS PE 3 SV 1
blastp_uniprot_sprot sp|Q7U3N4|SYV_SYNPX 4 370 + 367 Gaps:8 40.37 914 55.28 9e-135 Valine--tRNA ligase OS Synechococcus sp. (strain WH8102) GN valS PE 3 SV 1
blastp_uniprot_sprot sp|Q8DIS8|SYV_THEEB 4 368 + 365 Gaps:10 40.20 913 55.04 2e-134 Valine--tRNA ligase OS Thermosynechococcus elongatus (strain BP-1) GN valS PE 3 SV 1
blastp_uniprot_sprot sp|Q7V9I9|SYV_PROMA 4 370 + 367 Gaps:9 40.09 933 53.48 3e-134 Valine--tRNA ligase OS Prochlorococcus marinus (strain SARG / CCMP1375 / SS120) GN valS PE 3 SV 1
blastp_uniprot_sprot sp|Q5N3J4|SYV_SYNP6 4 368 + 365 Gaps:10 40.37 909 53.41 3e-133 Valine--tRNA ligase OS Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN valS PE 3 SV 1
blastp_uniprot_sprot sp|Q8YX97|SYV_NOSS1 4 368 + 365 Gaps:10 36.19 1014 52.59 7e-132 Valine--tRNA ligase OS Nostoc sp. (strain PCC 7120 / UTEX 2576) GN valS PE 3 SV 1

16 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 363 376 14 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Gene3D 33 178 146 G3DSA:3.90.740.10 "Reactome:REACT_71" none IPR009008
Phobius 1 336 336 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 337 362 26 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
SUPERFAMILY 30 183 154 SSF50677 "Reactome:REACT_71" none IPR009008
PRINTS 187 200 14 PR00986 "KEGG:00970+6.1.1.9","Reactome:REACT_71" Valyl-tRNA synthetase signature IPR002303
PRINTS 293 314 22 PR00986 "KEGG:00970+6.1.1.9","Reactome:REACT_71" Valyl-tRNA synthetase signature IPR002303
PRINTS 71 88 18 PR00986 "KEGG:00970+6.1.1.9","Reactome:REACT_71" Valyl-tRNA synthetase signature IPR002303
PRINTS 325 343 19 PR00986 "KEGG:00970+6.1.1.9","Reactome:REACT_71" Valyl-tRNA synthetase signature IPR002303
PANTHER 6 370 365 PTHR11946:SF49 none none none
SUPERFAMILY 182 368 187 SSF52374 none none none
SUPERFAMILY 6 31 26 SSF52374 none none none
Gene3D 182 369 188 G3DSA:3.40.50.620 none none IPR014729
Gene3D 4 32 29 G3DSA:3.40.50.620 none none IPR014729
Pfam 5 370 366 PF00133 "Reactome:REACT_71" tRNA synthetases class I (I, L, M and V) IPR002300
PANTHER 6 370 365 PTHR11946 none none none

0 Localization

12 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2014_nP_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 7,9 0,09 30,09 lod 2,3636 5
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Bourran2_2014_nEpiBC_A4 Qrob_Chr07 7 s_2FI9D9_500 s_1AXDMJ_325 12,26 0 34,9 lod 2,2306 6,1
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9
Bourran2_2002_QTL10_peak_Bud_burst_3P Qrob_Chr07 7 s_1CAWP_311 s_1BEZ9M_461 7,5 0 21,5 lod 3,7 6,3
Bourran2_2014_nPriBD*_A4 Qrob_Chr07 7 s_1A7UI0_596 s_1A3H6S_352 8,02 0 20,53 lod 4,1062 10,8

0 Targeting