Protein : Qrob_P0488480.2 Q. robur
Protein Identifier  ? Qrob_P0488480.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K11662 - actin-related protein 6 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 531  
Kegg Orthology  K11662
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0006338 chromatin remodeling Dynamic structural changes to eukaryotic chromatin occurring throughout the cell division cycle. These changes range from the local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation.

45 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_038119 10 428 + 419 Gaps:23 98.85 435 76.05 0.0 Actin related protein isoform 1
blastp_kegg lcl|cmo:103496716 10 428 + 419 Gaps:29 98.88 445 73.86 0.0 actin-related protein 6
blastp_kegg lcl|cic:CICLE_v10008344mg 10 428 + 419 Gaps:24 98.85 434 75.99 0.0 hypothetical protein
blastp_kegg lcl|cit:102615138 10 428 + 419 Gaps:24 98.85 434 75.99 0.0 actin-related protein 6-like
blastp_kegg lcl|pmum:103341100 11 428 + 418 Gaps:31 98.59 427 76.01 0.0 actin-related protein 6
blastp_kegg lcl|pxb:103958348 12 428 + 417 Gaps:31 98.36 427 75.95 0.0 actin-related protein 6-like
blastp_kegg lcl|mdm:103400399 12 428 + 417 Gaps:31 98.36 427 75.48 0.0 actin-related protein 6-like
blastp_kegg lcl|fve:101312664 11 428 + 418 Gaps:33 98.36 426 76.37 0.0 LOW QUALITY PROTEIN: actin-related protein 6-like
blastp_kegg lcl|pxb:103953921 11 428 + 418 Gaps:31 98.59 427 75.30 0.0 actin-related protein 6-like
blastp_kegg lcl|rcu:RCOM_1074850 7 428 + 422 Gaps:29 95.10 449 76.11 0.0 hypothetical protein
blastp_pdb 3b63_I 14 423 + 410 Gaps:59 98.36 365 32.03 2e-37 mol:protein length:365 Actin
blastp_pdb 3b63_C 14 423 + 410 Gaps:59 98.36 365 32.03 2e-37 mol:protein length:365 Actin
blastp_pdb 1yag_A 14 423 + 410 Gaps:59 95.73 375 32.03 2e-37 mol:protein length:375 PROTEIN (ACTIN)
blastp_pdb 3b63_G 14 423 + 410 Gaps:59 98.36 365 32.03 4e-37 mol:protein length:365 Actin
blastp_pdb 3b63_A 14 423 + 410 Gaps:59 98.36 365 32.03 4e-37 mol:protein length:365 Actin
blastp_pdb 1yvn_A 14 423 + 410 Gaps:59 95.73 375 32.03 4e-37 mol:protein length:375 PROTEIN (ACTIN)
blastp_pdb 4efh_A 9 423 + 415 Gaps:57 97.07 375 31.32 5e-36 mol:protein length:375 Actin-1
blastp_pdb 3ffk_E 9 423 + 415 Gaps:57 96.55 377 29.67 8e-35 mol:protein length:377 actin alpha skeletal muscle
blastp_pdb 3ffk_B 9 423 + 415 Gaps:57 96.55 377 29.67 8e-35 mol:protein length:377 actin alpha skeletal muscle
blastp_pdb 3daw_A 9 423 + 415 Gaps:57 96.55 377 29.67 8e-35 mol:protein length:377 Actin alpha skeletal muscle
blastp_uniprot_sprot sp|Q8LGE3|ARP6_ARATH 10 428 + 419 Gaps:37 98.81 421 69.71 0.0 Actin-related protein 6 OS Arabidopsis thaliana GN ARP6 PE 1 SV 1
blastp_uniprot_sprot sp|Q5NBI2|ARP6_ORYSJ 11 428 + 418 Gaps:32 97.90 429 63.33 0.0 Actin-related protein 6 OS Oryza sativa subsp. japonica GN ARP6 PE 2 SV 1
blastp_uniprot_sprot sp|A2WNB0|ARP6_ORYSI 11 428 + 418 Gaps:32 97.90 429 63.33 0.0 Actin-related protein 6 OS Oryza sativa subsp. indica GN ARP6 PE 3 SV 1
blastp_uniprot_sprot sp|Q9D864|ARP6_MOUSE 14 425 + 412 Gaps:65 97.22 396 38.70 8e-72 Actin-related protein 6 OS Mus musculus GN Actr6 PE 2 SV 2
blastp_uniprot_sprot sp|Q54KZ7|ARP6_DICDI 13 423 + 411 Gaps:53 92.24 490 33.85 4e-71 Actin-related protein 6 OS Dictyostelium discoideum GN arpF PE 3 SV 1
blastp_uniprot_sprot sp|Q9GZN1|ARP6_HUMAN 14 425 + 412 Gaps:65 97.22 396 38.44 2e-70 Actin-related protein 6 OS Homo sapiens GN ACTR6 PE 1 SV 1
blastp_uniprot_sprot sp|Q9DEE9|ARP6_CHICK 14 423 + 410 Gaps:65 96.72 396 38.12 6e-70 Actin-related protein 6 OS Gallus gallus GN ACTR6 PE 2 SV 1
blastp_uniprot_sprot sp|P45890|ARP6_DROME 13 423 + 411 Gaps:60 97.24 398 34.63 3e-64 Actin-related protein 6 OS Drosophila melanogaster GN Arp6 PE 1 SV 1
blastp_uniprot_sprot sp|Q4W9M3|ARP6_ASPFU 15 425 + 411 Gaps:82 92.52 468 33.95 9e-60 Actin-like protein arp6 OS Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN arp6 PE 3 SV 1
blastp_uniprot_sprot sp|P0CM04|ARP6_CRYNJ 13 434 + 422 Gaps:51 84.69 490 33.73 4e-59 Actin-like protein ARP6 OS Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN ARP6 PE 3 SV 1

15 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 204 262 59 G3DSA:3.90.640.10 none none none
Gene3D 319 339 21 G3DSA:3.90.640.10 none none none
Gene3D 12 203 192 G3DSA:3.30.420.40 none none none
Gene3D 392 424 33 G3DSA:3.30.420.40 none none none
Gene3D 263 281 19 G3DSA:3.30.420.40 none none none
SUPERFAMILY 165 262 98 SSF53067 none none none
SUPERFAMILY 319 425 107 SSF53067 none none none
PANTHER 319 436 118 PTHR11937 none none IPR004000
PANTHER 12 266 255 PTHR11937 none none IPR004000
SMART 11 431 421 SM00268 none Actin IPR004000
Pfam 371 425 55 PF00022 none Actin IPR004000
Pfam 12 369 358 PF00022 none Actin IPR004000
PANTHER 319 436 118 PTHR11937:SF21 none none IPR030054
PANTHER 12 266 255 PTHR11937:SF21 none none IPR030054
SUPERFAMILY 11 146 136 SSF53067 none none none

0 Localization

1 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7

0 Targeting