Protein : Qrob_P0484540.2 Q. robur
Protein Identifier  ? Qrob_P0484540.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=56) PTHR22595 - CHITINASE-RELATED Gene Prediction Quality  validated
Protein length 

Sequence

Length: 319  
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0005975 carbohydrate metabolic process The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
GO:0004568 chitinase activity Catalysis of the hydrolysis of (1->4)-beta linkages of N-acetyl-D-glucosamine (GlcNAc) polymers of chitin and chitodextrins.
GO:0006032 chitin catabolic process The chemical reactions and pathways resulting in the breakdown of chitin, a linear polysaccharide consisting of beta-(1->4)-linked N-acetyl-D-glucosamine residues.
GO:0016998 cell wall macromolecule catabolic process The chemical reactions and pathways resulting in the breakdown of macromolecules that form part of a cell wall.

33 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100261982 37 312 + 276 Gaps:3 85.05 321 69.96 9e-140 chitinase-like protein 2
blastp_kegg lcl|rcu:RCOM_0999860 37 317 + 281 Gaps:6 86.73 324 67.26 4e-139 chitinase putative (EC:3.2.1.14)
blastp_kegg lcl|cit:102626061 6 311 + 306 Gaps:4 92.92 325 63.58 6e-139 chitinase-like protein 2-like
blastp_kegg lcl|cic:CICLE_v10005421mg 6 311 + 306 Gaps:4 92.92 325 63.58 1e-138 hypothetical protein
blastp_kegg lcl|pper:PRUPE_ppa008643mg 37 312 + 276 Gaps:3 84.26 324 68.13 5e-138 hypothetical protein
blastp_kegg lcl|pmum:103323122 37 312 + 276 Gaps:3 84.00 325 67.77 1e-137 chitinase-like protein 2
blastp_kegg lcl|cam:101494837 1 311 + 311 Gaps:5 96.86 318 63.31 3e-137 chitinase-like protein 2-like
blastp_kegg lcl|pop:POPTR_0010s15150g 39 311 + 273 Gaps:3 84.38 320 68.15 8e-137 POPTRDRAFT_723883 class1 chitinase family protein
blastp_kegg lcl|pper:PRUPE_ppa008743mg 7 315 + 309 Gaps:5 95.95 321 62.34 9e-137 hypothetical protein
blastp_kegg lcl|gmx:100809617 6 317 + 312 Gaps:8 96.53 317 62.75 8e-136 chitinase-like protein 2-like
blastp_pdb 3cql_B 61 292 + 232 Gaps:8 92.18 243 39.73 2e-53 mol:protein length:243 Endochitinase
blastp_pdb 3cql_A 61 292 + 232 Gaps:8 92.18 243 39.73 2e-53 mol:protein length:243 Endochitinase
blastp_pdb 1cns_B 56 292 + 237 Gaps:8 94.24 243 39.74 3e-48 mol:protein length:243 CHITINASE
blastp_pdb 1cns_A 56 292 + 237 Gaps:8 94.24 243 39.74 3e-48 mol:protein length:243 CHITINASE
blastp_pdb 2baa_A 56 292 + 237 Gaps:8 94.24 243 40.17 9e-48 mol:protein length:243 ENDOCHITINASE (26 KD)
blastp_pdb 3iwr_B 32 317 + 286 Gaps:13 88.35 309 36.63 1e-46 mol:protein length:309 Chitinase
blastp_pdb 3iwr_A 32 317 + 286 Gaps:13 88.35 309 36.63 1e-46 mol:protein length:309 Chitinase
blastp_pdb 2dkv_A 32 317 + 286 Gaps:13 88.35 309 36.63 1e-46 mol:protein length:309 chitinase
blastp_pdb 1dxj_A 57 310 + 254 Gaps:15 98.76 242 36.82 4e-46 mol:protein length:242 CLASS II CHITINASE
blastp_pdb 2z38_A 55 311 + 257 Gaps:12 99.19 247 36.73 2e-45 mol:protein length:247 Chitinase
blastp_uniprot_sprot sp|Q9LSP9|CTL2_ARATH 37 310 + 274 Gaps:4 81.68 333 66.18 4e-130 Chitinase-like protein 2 OS Arabidopsis thaliana GN CTL2 PE 2 SV 1
blastp_uniprot_sprot sp|Q9MA41|CTL1_ARATH 6 314 + 309 Gaps:8 96.88 321 57.88 1e-128 Chitinase-like protein 1 OS Arabidopsis thaliana GN CTL1 PE 1 SV 1
blastp_uniprot_sprot sp|Q05537|CHID_SOLLC 57 310 + 254 Gaps:13 97.97 246 41.08 1e-53 Basic endochitinase (Fragment) OS Solanum lycopersicum GN CHI14 PE 2 SV 1
blastp_uniprot_sprot sp|Q09023|CHI2_BRANA 55 310 + 256 Gaps:13 75.47 322 38.27 6e-53 Endochitinase CH25 OS Brassica napus PE 2 SV 1
blastp_uniprot_sprot sp|P85084|CHIT_CARPA 61 292 + 232 Gaps:8 92.18 243 40.62 8e-53 Endochitinase OS Carica papaya PE 1 SV 1
blastp_uniprot_sprot sp|Q41596|CHI1_THECC 1 292 + 292 Gaps:35 93.15 321 36.79 2e-52 Endochitinase 1 OS Theobroma cacao GN CHIA1 PE 2 SV 1
blastp_uniprot_sprot sp|P19171|CHIB_ARATH 61 310 + 250 Gaps:13 70.75 335 40.08 1e-51 Basic endochitinase B OS Arabidopsis thaliana GN CHI-B PE 1 SV 3
blastp_uniprot_sprot sp|Q39799|CHI1_GOSHI 19 291 + 273 Gaps:11 82.72 324 37.69 9e-51 Endochitinase 1 OS Gossypium hirsutum PE 3 SV 1
blastp_uniprot_sprot sp|Q39785|CHI2_GOSHI 19 291 + 273 Gaps:11 88.74 302 37.31 2e-50 Endochitinase 2 (Fragment) OS Gossypium hirsutum PE 2 SV 2
blastp_uniprot_sprot sp|P08252|CHI1_TOBAC 61 310 + 250 Gaps:13 72.04 329 37.55 2e-50 Endochitinase A OS Nicotiana tabacum GN CHN48 PE 1 SV 2

12 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 18 25 8 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
Gene3D 151 205 55 G3DSA:3.30.20.10 none none none
Phobius 1 5 5 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
Phobius 6 17 12 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
PANTHER 45 314 270 PTHR22595 none none none
Phobius 26 318 293 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 1 25 25 SIGNAL_PEPTIDE none Signal peptide region none
Pfam 63 293 231 PF00182 "KEGG:00520+3.2.1.14","MetaCyc:PWY-6902" Chitinase class I IPR000726
SUPERFAMILY 57 311 255 SSF53955 none none IPR023346
Gene3D 61 129 69 G3DSA:1.10.530.10 none none none
Gene3D 206 294 89 G3DSA:1.10.530.10 none none none
PIRSF 3 310 308 PIRSF001060 "KEGG:00520+3.2.1.14","MetaCyc:PWY-6902" none IPR016283

1 Localization

Analysis Start End Length
SignalP_EUK 1 24 23

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran_2000_2002_QTL6_Delta.F Qrob_Chr03 3 s_2HYXJ2_207 s_1AUAXK_317 29.12 6,3 45,37 lod 3.1666 0.026
Bourran2_2014_nLBD_3P Qrob_Chr03 3 s_1ET7H8_604 s_1BYNB5_834 23,73 0 46,72 lod 1,7573 3,8
PM_1999_QTL14_peak_Bud_burst_3P Qrob_Chr03 3 s_2F0SI1_756 v_6056_735 11,78 3,78 50,78 lod 2,5 4,5
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_rEpiBC*_3P Qrob_Chr03 3 s_1A3B3X_1163 s_1DKGMO_450 23,04 4,92 41,12 lod 2,5668 7

0 Targeting