Protein : Qrob_P0483750.2 Q. robur
Protein Identifier  ? Qrob_P0483750.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) PTHR11654//PTHR11654:SF83 - OLIGOPEPTIDE TRANSPORTER-RELATED // SUBFAMILY NOT NAMED Gene Prediction Quality  validated
Protein length 

Sequence

Length: 633  
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0005215 transporter activity Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells.
GO:0006810 transport The directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or pore.
GO:0006857 oligopeptide transport The directed movement of oligopeptides into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Oligopeptides are molecules that contain a small number (2 to 20) of amino-acid residues connected by peptide linkages.

28 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103322156 1 631 + 631 Gaps:2 98.74 637 86.65 0.0 protein NRT1/ PTR FAMILY 6.1
blastp_kegg lcl|fve:101306200 1 621 + 621 Gaps:3 98.10 632 87.58 0.0 probable peptide/nitrate transporter At5g13400-like
blastp_kegg lcl|vvi:100259213 1 632 + 632 none 98.75 640 84.81 0.0 probable peptide/nitrate transporter At5g13400-like
blastp_kegg lcl|mdm:103433154 1 631 + 631 Gaps:2 98.74 637 85.85 0.0 protein NRT1/ PTR FAMILY 6.1-like
blastp_kegg lcl|pxb:103950389 1 631 + 631 Gaps:2 98.74 637 85.85 0.0 protein NRT1/ PTR FAMILY 6.1-like
blastp_kegg lcl|pper:PRUPE_ppa017140mg 1 631 + 631 Gaps:2 98.74 637 85.85 0.0 hypothetical protein
blastp_kegg lcl|pxb:103944754 1 631 + 631 Gaps:2 98.74 637 84.90 0.0 protein NRT1/ PTR FAMILY 6.1-like
blastp_kegg lcl|pop:POPTR_0001s12890g 1 632 + 632 Gaps:1 93.07 678 84.31 0.0 POPTRDRAFT_839267 hypothetical protein
blastp_kegg lcl|mdm:103452501 1 631 + 631 Gaps:2 98.74 637 84.58 0.0 protein NRT1/ PTR FAMILY 6.1-like
blastp_kegg lcl|csv:101223913 1 631 + 631 Gaps:4 99.06 637 83.99 0.0 probable peptide/nitrate transporter At5g13400-like
blastp_pdb 2xut_C 77 569 + 493 Gaps:90 86.45 524 27.81 2e-17 mol:protein length:524 PROTON/PEPTIDE SYMPORTER FAMILY PROTEIN
blastp_pdb 2xut_B 77 569 + 493 Gaps:90 86.45 524 27.81 2e-17 mol:protein length:524 PROTON/PEPTIDE SYMPORTER FAMILY PROTEIN
blastp_pdb 2xut_A 77 569 + 493 Gaps:90 86.45 524 27.81 2e-17 mol:protein length:524 PROTON/PEPTIDE SYMPORTER FAMILY PROTEIN
blastp_uniprot_sprot sp|Q9LYR6|PTR49_ARATH 1 623 + 623 Gaps:8 98.88 624 79.09 0.0 Protein NRT1/ PTR FAMILY 6.1 OS Arabidopsis thaliana GN NPF6.1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9M390|PTR1_ARATH 56 619 + 564 Gaps:21 97.02 570 41.23 1e-144 Protein NRT1/ PTR FAMILY 8.1 OS Arabidopsis thaliana GN NPF8.1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LFB8|PTR5_ARATH 56 619 + 564 Gaps:20 96.84 570 42.21 3e-141 Protein NRT1/ PTR FAMILY 8.2 OS Arabidopsis thaliana GN NPF8.2 PE 2 SV 1
blastp_uniprot_sprot sp|P46032|PTR2_ARATH 56 621 + 566 Gaps:24 95.04 585 41.19 4e-137 Protein NRT1/ PTR FAMILY 8.3 OS Arabidopsis thaliana GN NPF8.3 PE 1 SV 1
blastp_uniprot_sprot sp|Q93Z20|PTR17_ARATH 46 603 + 558 Gaps:21 92.03 590 40.70 5e-129 Protein NRT1/ PTR FAMILY 8.5 OS Arabidopsis thaliana GN NPF8.5 PE 2 SV 1
blastp_uniprot_sprot sp|Q84WG0|PTR26_ARATH 56 616 + 561 Gaps:55 93.94 545 40.62 5e-117 Protein NRT1/ PTR FAMILY 8.4 OS Arabidopsis thaliana GN NPF8.4 PE 2 SV 2
blastp_uniprot_sprot sp|Q9LVE0|PTR33_ARATH 51 618 + 568 Gaps:37 92.71 590 39.67 3e-116 Protein NRT1/ PTR FAMILY 6.4 OS Arabidopsis thaliana GN NPF6.4 PE 1 SV 1
blastp_uniprot_sprot sp|Q9SX20|PTR18_ARATH 57 617 + 561 Gaps:23 92.95 596 37.36 9e-110 Protein NRT1/ PTR FAMILY 3.1 OS Arabidopsis thaliana GN NPF3.1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9FNL7|PTR3_ARATH 46 632 + 587 Gaps:16 98.45 582 37.17 2e-109 Protein NRT1/ PTR FAMILY 5.2 OS Arabidopsis thaliana GN NPF5.2 PE 2 SV 1
blastp_uniprot_sprot sp|Q9FNL8|PTR4_ARATH 46 618 + 573 Gaps:16 95.39 586 37.57 4e-109 Protein NRT1/ PTR FAMILY 5.3 OS Arabidopsis thaliana GN NPF5.3 PE 2 SV 1
rpsblast_cdd gnl|CDD|144446 140 548 + 409 Gaps:50 99.19 372 29.54 1e-47 pfam00854 PTR2 POT family. The POT (proton-dependent oligopeptide transport) family all appear to be proton dependent transporters.
rpsblast_cdd gnl|CDD|162112 89 317 + 229 Gaps:30 32.57 654 29.58 2e-18 TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics the antitumor agent bestatin and various protease inhibitors).
rpsblast_cdd gnl|CDD|32918 74 559 + 486 Gaps:82 86.35 498 22.09 4e-18 COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism].
rpsblast_cdd gnl|CDD|162111 76 289 + 214 Gaps:33 38.95 475 22.70 4e-07 TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter) bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters although they are found in yeast plants and animals. They function by proton symport in a 1:1 stoichiometry which is variable in different species. All of them are predicted to contain 12 transmembrane domains for which limited experimental evidence exists.
rpsblast_kog gnl|CDD|36451 49 618 + 570 Gaps:27 97.55 571 42.55 1e-140 KOG1237 KOG1237 KOG1237 H+/oligopeptide symporter [Amino acid transport and metabolism].

33 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 262 282 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 144 167 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 544 565 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1 86 86 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 481 505 25 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 117 137 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 87 105 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 443 462 20 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
SUPERFAMILY 194 292 99 SSF103473 none none IPR020846
SUPERFAMILY 64 165 102 SSF103473 none none IPR020846
SUPERFAMILY 403 617 215 SSF103473 none none IPR020846
Phobius 213 232 20 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 533 543 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 233 256 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 192 212 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 283 381 99 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Gene3D 87 288 202 G3DSA:1.20.1250.20 none none none
Phobius 591 611 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 405 423 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Pfam 140 548 409 PF00854 "Reactome:REACT_15518","Reactome:REACT_19419" POT family IPR000109
Phobius 612 632 21 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 424 442 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 566 590 25 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 257 261 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 382 404 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 106 116 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 55 618 564 PTHR11654 "Reactome:REACT_15518","Reactome:REACT_19419";signature_desc=OLIGOPEPTIDE TRANSPORTER-RELATED none IPR000109
Phobius 506 532 27 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 138 143 6 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 168 191 24 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none

12 Localization

Analysis Start End Length
TMHMM 421 443 22
TMHMM 145 167 22
TMHMM 119 138 19
TMHMM 87 104 17
TMHMM 509 531 22
TMHMM 463 480 17
TMHMM 261 283 22
TMHMM 234 256 22
TMHMM 589 611 22
TMHMM 191 213 22
TMHMM 379 401 22
TMHMM 543 565 22

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran_2000_2002_QTL6_Delta.F Qrob_Chr03 3 s_2HYXJ2_207 s_1AUAXK_317 29.12 6,3 45,37 lod 3.1666 0.026
Bourran2_2014_nLBD_3P Qrob_Chr03 3 s_1ET7H8_604 s_1BYNB5_834 23,73 0 46,72 lod 1,7573 3,8
PM_1999_QTL14_peak_Bud_burst_3P Qrob_Chr03 3 s_2F0SI1_756 v_6056_735 11,78 3,78 50,78 lod 2,5 4,5

0 Targeting