Protein : Qrob_P0478260.2 Q. robur
Protein Identifier  ? Qrob_P0478260.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K14050 - geranylgeranyl transferase type-2 subunit alpha [EC:2.5.1.60] Code Enzyme  EC:2.5.1.60
Gene Prediction Quality  validated Protein length 

Sequence

Length: 707  
Kegg Orthology  K14050
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0008318 protein prenyltransferase activity Catalysis of the covalent addition of an isoprenoid group such as a farnesyl or geranylgeranyl group via thioether linkages to a cysteine residue in a protein.
GO:0018342 protein prenylation The covalent attachment of a prenyl group to a protein; geranyl, farnesyl, or geranylgeranyl groups may be added.

34 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_034522 1 703 + 703 Gaps:9 99.86 697 72.56 0.0 RAB geranylgeranyl transferase alpha subunit 1 putative isoform 1
blastp_kegg lcl|pmum:103319478 1 703 + 703 Gaps:8 99.86 698 69.30 0.0 uncharacterized LOC103319478
blastp_kegg lcl|vvi:100248920 1 704 + 704 Gaps:8 100.00 704 70.03 0.0 uncharacterized LOC100248920
blastp_kegg lcl|mdm:103401999 1 695 + 695 Gaps:7 99.43 696 68.35 0.0 uncharacterized LOC103401999
blastp_kegg lcl|pxb:103964930 1 703 + 703 Gaps:7 99.86 701 67.29 0.0 uncharacterized LOC103964930
blastp_kegg lcl|cit:102615884 1 704 + 704 Gaps:7 100.00 699 69.96 0.0 geranylgeranyl transferase type-2 subunit alpha-like
blastp_kegg lcl|cic:CICLE_v10000458mg 1 704 + 704 Gaps:7 100.00 699 69.67 0.0 hypothetical protein
blastp_kegg lcl|fve:101296487 1 703 + 703 Gaps:2 99.86 704 66.15 0.0 uncharacterized protein LOC101296487
blastp_kegg lcl|pop:POPTR_0006s24150g 1 703 + 703 Gaps:10 99.86 696 66.47 0.0 POPTRDRAFT_561627 geranylgeranyl transferase alpha subunit-related family protein
blastp_kegg lcl|mdm:103441676 1 703 + 703 Gaps:7 99.86 701 66.71 0.0 uncharacterized LOC103441676
blastp_pdb 3hxf_A 1 235 + 235 Gaps:15 71.30 331 42.37 5e-46 mol:protein length:331 Geranylgeranyl transferase type-2 subunit alp
blastp_pdb 3hxe_A 1 235 + 235 Gaps:15 71.30 331 42.37 5e-46 mol:protein length:331 Geranylgeranyl transferase type-2 subunit alp
blastp_pdb 3hxd_A 1 235 + 235 Gaps:15 71.30 331 42.37 5e-46 mol:protein length:331 Geranylgeranyl transferase type-2 subunit alp
blastp_pdb 3hxc_A 1 235 + 235 Gaps:15 71.30 331 42.37 5e-46 mol:protein length:331 Geranylgeranyl transferase type-2 subunit alp
blastp_pdb 3hxb_A 1 235 + 235 Gaps:15 71.30 331 42.37 5e-46 mol:protein length:331 Geranylgeranyl transferase type-2 subunit alp
blastp_pdb 3dsx_A 1 235 + 235 Gaps:15 71.30 331 42.37 5e-46 mol:protein length:331 Geranylgeranyl transferase type-2 subunit alp
blastp_pdb 3dsw_A 1 235 + 235 Gaps:15 71.30 331 42.37 5e-46 mol:protein length:331 Geranylgeranyl transferase type-2 subunit alp
blastp_pdb 3dsv_A 1 235 + 235 Gaps:15 71.30 331 42.37 5e-46 mol:protein length:331 Geranylgeranyl transferase type-2 subunit alp
blastp_pdb 3dsu_A 1 235 + 235 Gaps:15 71.30 331 42.37 5e-46 mol:protein length:331 Geranylgeranyl transferase type-2 subunit alp
blastp_pdb 3dst_A 1 235 + 235 Gaps:15 71.30 331 42.37 5e-46 mol:protein length:331 Geranylgeranyl transferase type-2 subunit alp
blastp_uniprot_sprot sp|Q08602|PGTA_RAT 1 287 + 287 Gaps:25 49.03 567 40.65 2e-45 Geranylgeranyl transferase type-2 subunit alpha OS Rattus norvegicus GN Rabggta PE 1 SV 1
blastp_uniprot_sprot sp|Q92696|PGTA_HUMAN 1 243 + 243 Gaps:15 43.03 567 40.57 2e-45 Geranylgeranyl transferase type-2 subunit alpha OS Homo sapiens GN RABGGTA PE 1 SV 2
blastp_uniprot_sprot sp|Q5NVK5|PGTA_PONAB 1 243 + 243 Gaps:15 43.03 567 40.57 3e-45 Geranylgeranyl transferase type-2 subunit alpha OS Pongo abelii GN RABGGTA PE 2 SV 1
blastp_uniprot_sprot sp|A5A779|PGTA_PIG 1 243 + 243 Gaps:21 43.03 567 42.62 8e-45 Geranylgeranyl transferase type-2 subunit alpha OS Sus scrofa GN RABGGTA PE 2 SV 1
blastp_uniprot_sprot sp|Q9JHK4|PGTA_MOUSE 1 235 + 235 Gaps:15 41.62 567 41.95 2e-43 Geranylgeranyl transferase type-2 subunit alpha OS Mus musculus GN Rabggta PE 1 SV 1
blastp_uniprot_sprot sp|Q5EA80|PGTA_BOVIN 1 243 + 243 Gaps:21 43.03 567 41.39 8e-43 Geranylgeranyl transferase type-2 subunit alpha OS Bos taurus GN RABGGTA PE 2 SV 1
blastp_uniprot_sprot sp|Q55DQ4|PGTA_DICDI 1 241 + 241 Gaps:22 76.21 311 39.24 1e-39 Geranylgeranyl transferase type-2 subunit alpha OS Dictyostelium discoideum GN rabggta PE 3 SV 2
blastp_uniprot_sprot sp|O94412|PGTA_SCHPO 1 235 + 235 Gaps:18 70.64 344 35.80 3e-35 Geranylgeranyl transferase type-2 subunit alpha OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN bet4 PE 3 SV 1
blastp_uniprot_sprot sp|O93829|PGTA_CANAX 20 306 + 287 Gaps:47 85.18 371 29.43 1e-30 Geranylgeranyl transferase type-2 subunit alpha OS Candida albicans GN BET4 PE 3 SV 1
blastp_uniprot_sprot sp|Q00618|PGTA_YEAST 1 239 + 239 Gaps:25 73.39 327 36.25 2e-29 Geranylgeranyl transferase type-2 subunit alpha OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN BET4 PE 1 SV 3

26 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 1 243 243 PTHR11129 none none none
PANTHER 369 523 155 PTHR11129 none none none
ProSiteProfiles 40 74 35 PS51147 none Protein prenyltransferases alpha subunit repeat profile. IPR002088
Pfam 163 192 30 PF01239 none Protein prenyltransferase alpha subunit repeat IPR002088
Pfam 43 71 29 PF01239 none Protein prenyltransferase alpha subunit repeat IPR002088
Pfam 128 157 30 PF01239 none Protein prenyltransferase alpha subunit repeat IPR002088
Pfam 94 121 28 PF01239 none Protein prenyltransferase alpha subunit repeat IPR002088
Pfam 209 237 29 PF01239 none Protein prenyltransferase alpha subunit repeat IPR002088
SUPERFAMILY 1 241 241 SSF48439 none none none
SUPERFAMILY 431 506 76 SSF48439 none none none
ProSiteProfiles 206 240 35 PS51147 none Protein prenyltransferases alpha subunit repeat profile. IPR002088
ProSiteProfiles 90 124 35 PS51147 none Protein prenyltransferases alpha subunit repeat profile. IPR002088
ProSiteProfiles 668 689 22 PS51450 none Leucine-rich repeat profile. IPR001611
ProSiteProfiles 160 194 35 PS51147 none Protein prenyltransferases alpha subunit repeat profile. IPR002088
SUPERFAMILY 512 623 112 SSF52058 none none none
ProSiteProfiles 607 630 24 PS51450 none Leucine-rich repeat profile. IPR001611
Gene3D 658 705 48 G3DSA:3.80.10.10 none none none
Gene3D 537 622 86 G3DSA:3.80.10.10 none none none
Pfam 562 599 38 PF12799 none Leucine Rich repeats (2 copies) IPR025875
PANTHER 1 243 243 PTHR11129:SF2 none none none
PANTHER 369 523 155 PTHR11129:SF2 none none none
ProSiteProfiles 582 603 22 PS51450 none Leucine-rich repeat profile. IPR001611
Gene3D 426 507 82 G3DSA:1.25.40.120 none none none
Gene3D 1 240 240 G3DSA:1.25.40.120 none none none
ProSiteProfiles 560 581 22 PS51450 none Leucine-rich repeat profile. IPR001611
ProSiteProfiles 125 159 35 PS51147 none Protein prenyltransferases alpha subunit repeat profile. IPR002088

0 Localization

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC_3P Qrob_Chr05 5 s_2GDU0O_517 s_1BT8O3_239 25,81 0 55,45 lod 2,2101 5,5

0 Targeting