Protein : Qrob_P0478250.2 Q. robur
Protein Identifier  ? Qrob_P0478250.2 Organism . Name  Quercus robur
Score  60.3 Score Type  egn
Protein Description  (M=3) PTHR11207:SF1 - RIBONUCLEASE III Gene Prediction Quality  validated
Protein length 

Sequence

Length: 602  
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0003725 double-stranded RNA binding Interacting selectively and non-covalently with double-stranded RNA.

34 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_034521 2 598 + 597 Gaps:17 90.52 401 65.01 2e-122 DsRNA-binding domain-like superfamily protein isoform 1
blastp_kegg lcl|gmx:100782651 20 307 + 288 Gaps:12 80.22 359 68.40 3e-120 double-stranded RNA-binding protein 1-like
blastp_kegg lcl|gmx:100806833 20 307 + 288 Gaps:4 80.22 359 67.01 2e-119 double-stranded RNA-binding protein 1-like
blastp_kegg lcl|pop:POPTR_0005s19650g 19 305 + 287 Gaps:3 80.00 355 67.61 2e-118 POPTRDRAFT_209177 hypothetical protein
blastp_kegg lcl|rcu:RCOM_1039680 16 311 + 296 Gaps:3 81.72 361 66.78 2e-117 hypothetical protein
blastp_kegg lcl|cit:102616183 19 311 + 293 Gaps:3 70.33 418 66.67 2e-116 double-stranded RNA-binding protein 1-like
blastp_kegg lcl|vvi:100243781 19 294 + 276 Gaps:3 69.25 400 66.79 2e-114 double-stranded RNA-binding protein 1-like
blastp_kegg lcl|pop:POPTR_0002s11200g 19 305 + 287 Gaps:5 80.00 355 69.72 5e-114 POPTRDRAFT_643961 HYPONASTIC LEAVES 1 family protein
blastp_kegg lcl|pvu:PHAVU_009G036100g 19 289 + 271 Gaps:2 77.34 353 65.93 5e-113 hypothetical protein
blastp_kegg lcl|csv:101207053 19 294 + 276 Gaps:11 79.94 344 65.82 5e-111 double-stranded RNA-binding protein 1-like
blastp_pdb 2l2n_A 11 193 + 183 Gaps:4 97.09 103 80.00 3e-46 mol:protein length:103 Hyponastic leave 1
blastp_pdb 2l2m_A 106 180 + 75 none 97.40 77 82.67 7e-35 mol:protein length:77 Hyponastic leave 1
blastp_pdb 3adj_A 110 182 + 73 none 96.05 76 82.19 2e-32 mol:protein length:76 F21M12.9 protein
blastp_pdb 3adi_C 24 94 + 71 none 97.26 73 80.28 6e-32 mol:protein length:73 F21M12.9 protein
blastp_pdb 3adi_B 24 94 + 71 none 97.26 73 80.28 6e-32 mol:protein length:73 F21M12.9 protein
blastp_pdb 3adi_A 24 94 + 71 none 97.26 73 80.28 6e-32 mol:protein length:73 F21M12.9 protein
blastp_pdb 3adg_A 24 94 + 71 none 97.26 73 80.28 6e-32 mol:protein length:73 F21M12.9 protein
blastp_uniprot_sprot sp|O04492|DRB1_ARATH 11 221 + 211 Gaps:2 49.88 419 69.38 4e-92 Double-stranded RNA-binding protein 1 OS Arabidopsis thaliana GN DRB1 PE 1 SV 1
blastp_uniprot_sprot sp|Q0IQN6|DRB8_ORYSJ 20 207 + 188 Gaps:6 42.92 424 68.13 1e-71 Double-stranded RNA-binding protein 8 OS Oryza sativa subsp. japonica GN DRB8 PE 2 SV 1
blastp_uniprot_sprot sp|Q0IV63|DRB7_ORYSJ 20 279 + 260 Gaps:7 53.49 473 56.92 1e-71 Double-stranded RNA-binding protein 7 OS Oryza sativa subsp. japonica GN DRB7 PE 2 SV 1
blastp_uniprot_sprot sp|Q0DJA3|DRB3_ORYSJ 20 207 + 188 Gaps:6 41.65 437 67.03 2e-67 Double-stranded RNA-binding protein 3 OS Oryza sativa subsp. japonica GN DRB3 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LJF5|DRB3_ARATH 25 179 + 155 Gaps:1 42.90 359 38.96 6e-23 Double-stranded RNA-binding protein 3 OS Arabidopsis thaliana GN DRB3 PE 2 SV 1
blastp_uniprot_sprot sp|Q0DKP4|DRB2_ORYSJ 25 175 + 151 Gaps:4 25.80 593 48.37 7e-23 Double-stranded RNA-binding protein 2 OS Oryza sativa subsp. japonica GN DRB2 PE 2 SV 1
blastp_uniprot_sprot sp|B7E321|DRB5_ORYSJ 4 181 + 178 Gaps:4 41.58 404 48.21 1e-22 Double-stranded RNA-binding protein 5 OS Oryza sativa subsp. japonica GN DRB5 PE 2 SV 1
blastp_uniprot_sprot sp|Q8GY79|DRB5_ARATH 25 183 + 159 Gaps:7 40.20 393 37.34 6e-21 Double-stranded RNA-binding protein 5 OS Arabidopsis thaliana GN DRB5 PE 1 SV 1
blastp_uniprot_sprot sp|Q5N8Z0|DRB1_ORYSJ 25 178 + 154 Gaps:27 52.61 441 42.67 7e-20 Double-stranded RNA-binding protein 1 OS Oryza sativa subsp. japonica GN DRB1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SKN2|DRB2_ARATH 25 189 + 165 Gaps:5 36.87 434 39.38 8e-20 Double-stranded RNA-binding protein 2 OS Arabidopsis thaliana GN DRB2 PE 1 SV 1
rpsblast_cdd gnl|CDD|178863 26 94 + 69 Gaps:2 30.13 229 44.93 9e-14 PRK00102 rnc ribonuclease III Reviewed.
rpsblast_cdd gnl|CDD|200945 27 175 + 149 Gaps:2 98.48 66 53.85 7e-13 pfam00035 dsrm Double-stranded RNA binding motif. Sequences gathered for seed by HMM_iterative_training Putative motif shared by proteins that bind to dsRNA. At least some DSRM proteins seem to bind to specific RNA targets. Exemplified by Staufen which is involved in localisation of at least five different mRNAs in the early Drosophila embryo. Also by interferon-induced protein kinase in humans which is part of the cellular response to dsRNA.
rpsblast_cdd gnl|CDD|28930 26 178 + 153 Gaps:2 98.53 68 55.22 5e-12 cd00048 DSRM Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR RNA helicases Drosophila staufen protein E. coli RNase III RNases H1 and dsRNA dependent adenosine deaminases..

17 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 1 23 23 SIGNAL_PEPTIDE none Signal peptide region none
SMART 112 179 68 SM00358 none Double-stranded RNA binding motif IPR014720
SMART 26 93 68 SM00358 none Double-stranded RNA binding motif IPR014720
PANTHER 20 283 264 PTHR11207 none none none
Phobius 1 6 6 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
SUPERFAMILY 113 180 68 SSF54768 none none none
Gene3D 113 179 67 G3DSA:3.30.160.20 none none IPR014720
Gene3D 26 92 67 G3DSA:3.30.160.20 none none IPR014720
Pfam 113 176 64 PF00035 none Double-stranded RNA binding motif IPR014720
Pfam 27 92 66 PF00035 none Double-stranded RNA binding motif IPR014720
Phobius 24 601 578 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
ProSiteProfiles 25 94 70 PS50137 none Double stranded RNA-binding domain (dsRBD) profile. IPR014720
Phobius 18 23 6 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
ProSiteProfiles 111 180 70 PS50137 none Double stranded RNA-binding domain (dsRBD) profile. IPR014720
Phobius 7 17 11 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
SUPERFAMILY 26 101 76 SSF54768 none none none
PANTHER 20 283 264 PTHR11207:SF1 none none IPR031147

1 Localization

Analysis Start End Length
SignalP_EUK 1 23 22

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC_3P Qrob_Chr05 5 s_2GDU0O_517 s_1BT8O3_239 25,81 0 55,45 lod 2,2101 5,5

0 Targeting