Protein : Qrob_P0477510.2 Q. robur
Protein Identifier  ? Qrob_P0477510.2 Organism . Name  Quercus robur
Score  95.1 Score Type  egn
Protein Description  (M=3) PF03468//PF03469//PF03470 - XS domain // XH domain // XS zinc finger domain Gene Prediction Quality  validated
Protein length 

Sequence

Length: 631  
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0031047 gene silencing by RNA Any process in which RNA molecules inactivate expression of target genes.

17 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cic:CICLE_v10025142mg 1 629 + 629 Gaps:6 99.53 634 65.61 0.0 hypothetical protein
blastp_kegg lcl|cit:102629124 1 629 + 629 Gaps:6 99.84 632 65.61 0.0 myosin-10-like
blastp_kegg lcl|tcc:TCM_027414 1 629 + 629 Gaps:5 99.84 633 67.25 0.0 XH/XS domain-containing protein
blastp_kegg lcl|mdm:103424873 1 629 + 629 Gaps:4 99.84 634 64.61 0.0 putative leucine-rich repeat-containing protein DDB_G0290503
blastp_kegg lcl|pmum:103328166 16 629 + 614 Gaps:4 97.32 635 66.67 0.0 interaptin-like
blastp_kegg lcl|mdm:103438740 1 629 + 629 Gaps:4 99.84 634 64.45 0.0 putative leucine-rich repeat-containing protein DDB_G0290503
blastp_kegg lcl|vvi:100257549 1 629 + 629 Gaps:7 100.00 626 64.22 0.0 uncharacterized LOC100257549
blastp_kegg lcl|pper:PRUPE_ppa002776mg 16 629 + 614 Gaps:4 97.32 635 66.34 0.0 hypothetical protein
blastp_kegg lcl|vvi:100252420 1 629 + 629 Gaps:4 100.00 633 63.67 0.0 uncharacterized LOC100252420
blastp_kegg lcl|rcu:RCOM_0470910 1 629 + 629 Gaps:10 100.00 637 64.84 0.0 hypothetical protein
rpsblast_cdd gnl|CDD|202652 498 629 + 132 none 100.00 132 59.09 4e-42 pfam03469 XH XH domain. The XH (rice gene X Homology) domain is found in a family of plant proteins including gene X. The molecular function of these proteins is unknown. However these proteins usually contain an XS domain that is also found in the PTGS protein SGS3. This domain contains a conserved glutamate residue that may be functionally important.
rpsblast_cdd gnl|CDD|190648 114 224 + 111 Gaps:4 99.14 116 40.87 3e-27 pfam03468 XS XS domain. The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X and SGS3. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain has recently been predicted to possess an RRM-like RNA-binding domain by fold recognition.
rpsblast_cdd gnl|CDD|190649 42 83 + 42 none 97.67 43 73.81 3e-15 pfam03470 zf-XS XS zinc finger domain. This domain is a putative nucleic acid binding zinc finger found in proteins that also contain an XS domain.
rpsblast_cdd gnl|CDD|31389 254 487 + 234 Gaps:13 21.24 1163 20.65 7e-08 COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning].
rpsblast_cdd gnl|CDD|162739 223 489 + 267 Gaps:22 22.82 1179 18.96 2e-07 TIGR02168 SMC_prok_B chromosome segregation protein SMC common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria archaea and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
rpsblast_cdd gnl|CDD|162740 235 510 + 276 Gaps:57 39.86 1164 20.26 4e-07 TIGR02169 SMC_prok_A chromosome segregation protein SMC primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria archaea and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes but six paralogs (excluded from this family) are found in eukarotes where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex Synechocystis etc) the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved but the central hinge region is skewed in composition and highly divergent.
rpsblast_kog gnl|CDD|35383 230 571 + 342 Gaps:102 34.61 1930 26.05 1e-07 KOG0161 KOG0161 KOG0161 Myosin class II heavy chain [Cytoskeleton].

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 117 629 513 PTHR21596 none none none
Pfam 114 224 111 PF03468 none XS domain IPR005380
Coils 432 467 36 Coil none none none
PANTHER 117 629 513 PTHR21596:SF3 none none none
Coils 252 273 22 Coil none none none
Coils 383 428 46 Coil none none none
Pfam 498 629 132 PF03469 none XH domain IPR005379
Coils 550 571 22 Coil none none none
Pfam 42 83 42 PF03470 none XS zinc finger domain IPR005381
Coils 309 355 47 Coil none none none

0 Localization

20 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2002_QTL7_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 29 52 lod 8,1 16
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nP_A4 Qrob_Chr02 2 s_1A0FUE_1868 s_1A1UAI_500 20,64 20,47 21,36 lod 5.8 10.9
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf Qrob_Chr02 2 s_1AEP21_172 v_6048_204 46.33 22,5 65,23 lod 4.972 0.03
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
Bourran1_2003_QTL1_peak_Bud_burst_3P Qrob_Chr02 2 s_1AR8KI_1183 s_1B0QB1_473 22 6 41 lod 4,2 11,5
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nEpis_A4 Qrob_Chr02 2 s_1BAGIZ_823 s_1BN4CB_644 23,06 23,06 23,06 lod 4.9 11
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7
Champenoux_2015_nSecLBD_A4 Qrob_Chr02 2 s_1AN4ZM_1665 v_8587_238 18,52 18,89 18,27 lod 3.2 7.4

0 Targeting