Protein : Qrob_P0473700.2 Q. robur
Protein Identifier  ? Qrob_P0473700.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) PTHR23249:SF15 - TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 4 (PTHR23249:SF15) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 142  
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0006810 transport The directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or pore.
GO:0006888 ER to Golgi vesicle-mediated transport The directed movement of substances from the endoplasmic reticulum (ER) to the Golgi, mediated by COP II vesicles. Small COP II coated vesicles form from the ER and then fuse directly with the cis-Golgi. Larger structures are transported along microtubules to the cis-Golgi.
GO:0005801 cis-Golgi network The network of interconnected tubular and cisternal structures located at the convex side of the Golgi apparatus, which abuts the endoplasmic reticulum.

31 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cit:102619996 1 141 + 141 none 100.00 141 95.04 7e-97 trafficking protein particle complex subunit 4-like
blastp_kegg lcl|cmo:103494018 1 141 + 141 none 100.00 141 94.33 1e-96 trafficking protein particle complex subunit 4
blastp_kegg lcl|csv:101222006 1 141 + 141 none 100.00 141 93.62 6e-96 trafficking protein particle complex subunit 4-like
blastp_kegg lcl|vvi:100264962 1 141 + 141 none 100.00 141 95.04 6e-96 trafficking protein particle complex subunit 4-like
blastp_kegg lcl|pop:POPTR_0009s07410g 1 141 + 141 none 100.00 141 93.62 5e-95 POPTRDRAFT_557694 hypothetical protein
blastp_kegg lcl|tcc:TCM_021929 1 141 + 141 none 100.00 141 92.91 6e-95 SNARE-like superfamily protein
blastp_kegg lcl|cic:CICLE_v10012951mg 1 141 + 141 none 85.45 165 93.62 9e-95 hypothetical protein
blastp_kegg lcl|rcu:RCOM_0103050 1 141 + 141 none 100.00 141 92.91 1e-94 synbindin putative
blastp_kegg lcl|mtr:MTR_8g103680 1 141 + 141 none 66.20 213 90.07 2e-93 Trafficking protein particle complex subunit
blastp_kegg lcl|pxb:103944325 1 141 + 141 none 100.00 141 91.49 9e-93 trafficking protein particle complex subunit 4-like
blastp_pdb 2j3t_D 27 140 + 114 Gaps:1 52.51 219 53.91 2e-40 mol:protein length:219 TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT
blastp_pdb 2zmv_B 27 140 + 114 Gaps:1 50.66 227 53.91 2e-40 mol:protein length:227 Trafficking protein particle complex subunit
blastp_pdb 2zmv_A 27 140 + 114 Gaps:1 50.66 227 53.91 2e-40 mol:protein length:227 Trafficking protein particle complex subunit
blastp_pdb 3cue_S 57 124 + 68 Gaps:24 42.01 219 34.78 2e-09 mol:protein length:219 Transport protein particle 23 kDa subunit
blastp_pdb 3cue_M 57 124 + 68 Gaps:24 42.01 219 34.78 2e-09 mol:protein length:219 Transport protein particle 23 kDa subunit
blastp_pdb 3cue_G 57 124 + 68 Gaps:24 42.01 219 34.78 2e-09 mol:protein length:219 Transport protein particle 23 kDa subunit
blastp_pdb 3cue_A 57 124 + 68 Gaps:24 42.01 219 34.78 2e-09 mol:protein length:219 Transport protein particle 23 kDa subunit
blastp_pdb 2j3t_C 3 132 + 130 Gaps:4 92.41 145 22.39 4e-06 mol:protein length:145 TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT
blastp_uniprot_sprot sp|Q54UU1|TPPC4_DICDI 3 128 + 126 Gaps:1 94.07 135 53.54 1e-45 Trafficking protein particle complex subunit 4 OS Dictyostelium discoideum GN trappc4 PE 3 SV 1
blastp_uniprot_sprot sp|Q2TBL9|TPPC4_BOVIN 27 140 + 114 Gaps:1 52.51 219 54.78 2e-40 Trafficking protein particle complex subunit 4 OS Bos taurus GN TRAPPC4 PE 2 SV 1
blastp_uniprot_sprot sp|Q69BT7|TPPC4_RAT 27 140 + 114 Gaps:1 52.51 219 54.78 2e-40 Trafficking protein particle complex subunit 4 OS Rattus norvegicus GN Trappc4 PE 2 SV 1
blastp_uniprot_sprot sp|Q9ES56|TPPC4_MOUSE 27 140 + 114 Gaps:1 52.51 219 54.78 2e-40 Trafficking protein particle complex subunit 4 OS Mus musculus GN Trappc4 PE 1 SV 1
blastp_uniprot_sprot sp|Q5R9J9|TPPC4_PONAB 27 140 + 114 Gaps:1 52.51 219 53.91 6e-40 Trafficking protein particle complex subunit 4 OS Pongo abelii GN TRAPPC4 PE 2 SV 1
blastp_uniprot_sprot sp|Q9Y296|TPPC4_HUMAN 27 140 + 114 Gaps:1 52.51 219 53.91 6e-40 Trafficking protein particle complex subunit 4 OS Homo sapiens GN TRAPPC4 PE 1 SV 1
blastp_uniprot_sprot sp|O43041|TRS23_SCHPO 4 127 + 124 Gaps:1 94.70 132 49.60 1e-37 Transport protein particle subunit trs23 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN trs23 PE 3 SV 1
blastp_uniprot_sprot sp|Q557G3|TPPC1_DICDI 4 133 + 130 Gaps:5 95.07 142 27.41 8e-14 Trafficking protein particle complex subunit 1 OS Dictyostelium discoideum GN trappc1-1 PE 3 SV 1
blastp_uniprot_sprot sp|Q03784|TRS23_YEAST 57 124 + 68 Gaps:24 42.01 219 34.78 6e-09 Trafficking protein particle complex subunit 23 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN TRS23 PE 1 SV 1
rpsblast_cdd gnl|CDD|146632 4 132 + 129 Gaps:4 98.52 135 56.39 3e-50 pfam04099 Sybindin Sybindin-like family. Sybindin is a physiological syndecan-2 ligand on dendritic spines the small protrusions on the surface of dendrites that receive the vast majority of excitatory synapses.
rpsblast_cdd gnl|CDD|34723 3 132 + 130 Gaps:1 97.76 134 44.27 4e-30 COG5122 TRS23 Transport protein particle (TRAPP) complex subunit [Intracellular trafficking and secretion].
rpsblast_kog gnl|CDD|38579 23 135 + 113 none 56.78 199 58.41 2e-44 KOG3369 KOG3369 KOG3369 Transport protein particle (TRAPP) complex subunit [Intracellular trafficking secretion and vesicular transport].

5 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 1 133 133 SSF64356 none none IPR011012
Pfam 4 132 129 PF04099 none Sybindin-like family IPR007233
Gene3D 2 133 132 G3DSA:3.30.450.70 none none none
PANTHER 3 140 138 PTHR23249:SF15 none none none
PANTHER 3 140 138 PTHR23249 none none IPR007233

0 Localization

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran_2000_2002_QTL6_Delta.F Qrob_Chr03 3 s_2HYXJ2_207 s_1AUAXK_317 29.12 6,3 45,37 lod 3.1666 0.026
Bourran2_2014_nLBD_3P Qrob_Chr03 3 s_1ET7H8_604 s_1BYNB5_834 23,73 0 46,72 lod 1,7573 3,8
PM_1999_QTL14_peak_Bud_burst_3P Qrob_Chr03 3 s_2F0SI1_756 v_6056_735 11,78 3,78 50,78 lod 2,5 4,5
Bourran2_2014_rEpiBC*_3P Qrob_Chr03 3 s_1A3B3X_1163 s_1DKGMO_450 23,04 4,92 41,12 lod 2,5668 7

0 Targeting