Protein : Qrob_P0473610.2 Q. robur
Protein Identifier  ? Qrob_P0473610.2 Organism . Name  Quercus robur
Score  99.0 Score Type  egn
Protein Description  (M=1) PTHR12081:SF18 - TRANSCRIPTION FACTOR E2F Gene Prediction Quality  validated
Protein length 

Sequence

Length: 378  
Kegg Orthology  K06620
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0003700 sequence-specific DNA binding transcription factor activity Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0005667 transcription factor complex A protein complex that is capable of associating with DNA by direct binding, or via other DNA-binding proteins or complexes, and regulating transcription.

24 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100247139 2 373 + 372 Gaps:69 88.56 437 52.45 3e-111 transcription factor E2FC-like
blastp_kegg lcl|cit:102625601 2 373 + 372 Gaps:75 98.83 428 48.46 1e-108 transcription factor E2FC-like
blastp_kegg lcl|tcc:TCM_046885 47 372 + 326 Gaps:43 85.88 425 53.42 1e-108 Winged-helix DNA-binding transcription factor family protein putative
blastp_kegg lcl|pmum:103321389 53 373 + 321 Gaps:44 83.56 432 54.57 1e-103 transcription factor E2FC
blastp_kegg lcl|mdm:103420893 51 373 + 323 Gaps:41 84.38 429 51.10 3e-103 transcription factor E2FC-like
blastp_kegg lcl|cam:101508876 50 373 + 324 Gaps:50 94.92 394 47.59 3e-100 transcription factor E2FC-like
blastp_kegg lcl|mdm:103440333 66 373 + 308 Gaps:41 98.58 352 51.59 3e-100 transcription factor E2FC
blastp_kegg lcl|rcu:RCOM_1597450 39 375 + 337 Gaps:66 87.82 386 52.80 1e-99 E2F4 5 putative
blastp_kegg lcl|gmx:100797301 88 373 + 286 Gaps:31 91.09 348 53.63 8e-98 transcription factor E2FC-like
blastp_kegg lcl|pop:POPTR_0002s02500g 55 371 + 317 Gaps:41 73.53 476 50.86 7e-97 POPTRDRAFT_550895 E2F transcription factor-2 family protein
blastp_pdb 1cf7_A 116 190 + 75 Gaps:2 98.68 76 69.33 1e-23 mol:protein length:76 PROTEIN (TRANSCRIPTION FACTOR E2F-4)
blastp_uniprot_sprot sp|Q9FV70|E2FC_ARATH 126 372 + 247 Gaps:47 59.09 396 57.26 9e-74 Transcription factor E2FC OS Arabidopsis thaliana GN E2FC PE 1 SV 1
blastp_uniprot_sprot sp|Q9FNY0|E2FA_ARATH 119 372 + 254 Gaps:36 59.79 485 44.48 6e-61 Transcription factor E2FA OS Arabidopsis thaliana GN E2FA PE 1 SV 1
blastp_uniprot_sprot sp|Q9FV71|E2FB_ARATH 101 372 + 272 Gaps:68 71.22 469 40.42 1e-60 Transcription factor E2FB OS Arabidopsis thaliana GN E2FB PE 1 SV 1
blastp_uniprot_sprot sp|O35261|E2F3_MOUSE 99 313 + 215 Gaps:37 52.08 457 39.50 8e-37 Transcription factor E2F3 OS Mus musculus GN E2f3 PE 1 SV 2
blastp_uniprot_sprot sp|O00716|E2F3_HUMAN 99 313 + 215 Gaps:37 51.18 465 39.50 1e-36 Transcription factor E2F3 OS Homo sapiens GN E2F3 PE 1 SV 1
blastp_uniprot_sprot sp|Q14209|E2F2_HUMAN 115 322 + 208 Gaps:33 49.66 437 41.94 3e-35 Transcription factor E2F2 OS Homo sapiens GN E2F2 PE 1 SV 1
blastp_uniprot_sprot sp|Q16254|E2F4_HUMAN 128 288 + 161 Gaps:23 42.62 413 46.59 4e-35 Transcription factor E2F4 OS Homo sapiens GN E2F4 PE 1 SV 2
blastp_uniprot_sprot sp|Q15329|E2F5_HUMAN 121 288 + 168 Gaps:24 53.18 346 45.65 6e-35 Transcription factor E2F5 OS Homo sapiens GN E2F5 PE 1 SV 1
blastp_uniprot_sprot sp|Q61502|E2F5_MOUSE 121 299 + 179 Gaps:29 56.72 335 45.79 6e-35 Transcription factor E2F5 OS Mus musculus GN E2f5 PE 1 SV 2
blastp_uniprot_sprot sp|Q62814|E2F5_RAT 121 288 + 168 Gaps:24 61.33 300 45.65 9e-35 Transcription factor E2F5 (Fragment) OS Rattus norvegicus GN E2f5 PE 2 SV 1
rpsblast_cdd gnl|CDD|202203 129 188 + 60 Gaps:1 91.04 67 68.85 3e-25 pfam02319 E2F_TDP E2F/DP family winged-helix DNA-binding domain. This family contains the transcription factor E2F and its dimerisation partners TDP1 and TDP2 which stimulate E2F-dependent transcription. E2F binds to DNA as a homodimer or as a heterodimer in association with TDP1/2 the heterodimer having increased binding efficiency. The crystal structure of an E2F4-DP2-DNA complex shows that the DNA-binding domains of the E2F and DP proteins both have a fold related to the winged-helix DNA-binding motif. Recognition of the central c/gGCGCg/c sequence of the consensus DNA-binding site is symmetric and amino acids that contact these bases are conserved among all known E2F and DP proteins.
rpsblast_kog gnl|CDD|37788 78 372 + 295 Gaps:38 85.59 354 35.97 8e-50 KOG2577 KOG2577 KOG2577 Transcription factor E2F/dimerization partner (TDP) [Transcription].
rpsblast_kog gnl|CDD|37789 128 192 + 65 none 16.75 388 40.00 3e-10 KOG2578 KOG2578 KOG2578 Transcription factor E2F/dimerization partner (TDP)-like proteins [Transcription].

7 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 52 372 321 PTHR12081:SF18 none none none
PANTHER 52 372 321 PTHR12081 none none IPR015633
SUPERFAMILY 200 288 89 SSF144074 none none none
Gene3D 122 189 68 G3DSA:1.10.10.10 none none IPR011991
SUPERFAMILY 125 186 62 SSF46785 none none none
Pfam 128 188 61 PF02319 none E2F/DP family winged-helix DNA-binding domain IPR003316
Coils 194 215 22 Coil none none none

0 Localization

7 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL1_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AMVCC_444 s_1BE1VC_321 4 0 31 lod 3,2 7,4
Bourran2_2003_QTL8_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AH7I_610 s_1BE1VC_321 4,6 0 28 lod 3,5 7,4
Bourran2_2007_QTL6_peak_Bud_burst_3P Qrob_Chr01 1 s_1BE1VC_321 s_1A5JRZ_890 5 0 25 lod 2,4 6
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Bourran2_2002_QTL7_peak_Bud_burst_A4 Qrob_Chr01 1 s_1DFK66_275 s_1AMVCC_444 3,3 0 7,3 lod 9,4 14,8
Bourran2_2014_nSeqBC*_A4 Qrob_Chr01 1 s_1CFE4C_2114 s_1BDNCB_819 15,25 2 28,5 lod 2,9903 8,3

0 Targeting