Protein : Qrob_P0473600.2 Q. robur
Protein Identifier  ? Qrob_P0473600.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) K03256 - tRNA (adenine-N(1)-)-methyltransferase non-catalytic subunit Gene Prediction Quality  validated
Protein length 

Sequence

Length: 248  
Kegg Orthology  K03256
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0030488 tRNA methylation The posttranscriptional addition of methyl groups to specific residues in a tRNA molecule.
GO:0031515 tRNA (m1A) methyltransferase complex A protein complex involved in the catalysis of the formation of the modified nucleotide 1-methyladenosine (m1A) in tRNA. In yeast, it is a heterotetramer of two subunits, Gcd10p and Gcd14p, while in bacteria and archaea it is a homotetramer.

22 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|gmx:100783601 1 246 + 246 Gaps:3 53.61 457 73.06 1e-124 tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6-like
blastp_kegg lcl|fve:101309026 1 247 + 247 Gaps:2 55.21 451 72.69 1e-122 tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6-like
blastp_kegg lcl|pper:PRUPE_ppa005656mg 1 243 + 243 Gaps:1 54.34 449 70.90 6e-121 hypothetical protein
blastp_kegg lcl|pvu:PHAVU_001G007200g 1 247 + 247 Gaps:4 52.13 470 72.65 2e-120 hypothetical protein
blastp_kegg lcl|gmx:100788691 1 246 + 246 Gaps:4 52.93 461 72.54 2e-120 tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6-like
blastp_kegg lcl|mdm:103450382 1 243 + 243 Gaps:1 54.10 451 70.90 1e-119 tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6
blastp_kegg lcl|mdm:103420866 1 246 + 246 Gaps:1 54.77 451 71.26 2e-119 tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6-like
blastp_kegg lcl|tcc:TCM_046884 1 246 + 246 Gaps:1 54.77 451 70.85 3e-119 Eukaryotic initiation factor 3 gamma subunit family protein
blastp_kegg lcl|pmum:103321261 1 243 + 243 Gaps:1 54.34 449 70.08 3e-119 tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6
blastp_kegg lcl|cam:101512731 1 246 + 246 Gaps:7 54.90 439 72.20 1e-118 tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6-like
blastp_uniprot_sprot sp|Q54UB1|TRM6_DICDI 1 244 + 244 Gaps:28 44.53 521 36.64 1e-27 tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6 OS Dictyostelium discoideum GN trmt6 PE 3 SV 1
blastp_uniprot_sprot sp|Q2T9V5|TRM6_BOVIN 1 230 + 230 Gaps:27 50.91 497 28.06 1e-20 tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 OS Bos taurus GN TRMT6 PE 2 SV 1
blastp_uniprot_sprot sp|Q9UJA5|TRM6_HUMAN 1 230 + 230 Gaps:25 50.91 497 27.27 1e-19 tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 OS Homo sapiens GN TRMT6 PE 1 SV 1
blastp_uniprot_sprot sp|Q8CE96|TRM6_MOUSE 1 230 + 230 Gaps:26 50.70 497 26.19 2e-19 tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 OS Mus musculus GN Trmt6 PE 1 SV 1
blastp_uniprot_sprot sp|P0CS06|TRM6_CRYNJ 1 246 + 246 Gaps:35 37.68 560 32.23 6e-16 tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 OS Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN TRM6 PE 3 SV 1
blastp_uniprot_sprot sp|P0CS07|TRM6_CRYNB 1 246 + 246 Gaps:35 37.68 560 32.23 6e-16 tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 OS Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN TRM6 PE 3 SV 1
blastp_uniprot_sprot sp|Q6BKK7|TRM6_DEBHA 2 243 + 242 Gaps:44 44.40 473 29.52 8e-15 tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 OS Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN TRM6 PE 3 SV 2
blastp_uniprot_sprot sp|Q9HGL4|TRM6_SCHPO 1 246 + 246 Gaps:57 53.90 462 28.51 5e-12 tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN gcd10 PE 3 SV 1
blastp_uniprot_sprot sp|Q5A6Q4|TRM6_CANAL 2 244 + 243 Gaps:38 46.14 453 27.75 2e-11 tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 OS Candida albicans (strain SC5314 / ATCC MYA-2876) GN TRM6 PE 3 SV 1
blastp_uniprot_sprot sp|Q6CLF6|TRM6_KLULA 1 238 + 238 Gaps:57 45.17 476 26.51 1e-05 tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 OS Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN TRM6 PE 3 SV 1
rpsblast_cdd gnl|CDD|190903 1 65 + 65 none 21.74 299 35.38 7e-11 pfam04189 Gcd10p Gcd10p family. eIF-3 is a multi-subunit complex that stimulates translation initiation in vitro at several different steps. This family corresponds to the gamma subunit if eIF3. The Yeast protein Gcd10p has also been shown to be part of a complex with the methyltransferase Gcd14p that is involved in modifying tRNA.
rpsblast_kog gnl|CDD|36630 1 243 + 243 Gaps:26 51.16 475 35.39 9e-52 KOG1416 KOG1416 KOG1416 tRNA(1-methyladenosine) methyltransferase subunit GCD10 [Translation ribosomal structure and biogenesis].

2 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 1 247 247 PTHR12945 none none IPR017423
Pfam 1 78 78 PF04189 none Gcd10p family IPR017423

0 Localization

7 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL1_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AMVCC_444 s_1BE1VC_321 4 0 31 lod 3,2 7,4
Bourran2_2003_QTL8_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AH7I_610 s_1BE1VC_321 4,6 0 28 lod 3,5 7,4
Bourran2_2007_QTL6_peak_Bud_burst_3P Qrob_Chr01 1 s_1BE1VC_321 s_1A5JRZ_890 5 0 25 lod 2,4 6
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Bourran2_2002_QTL7_peak_Bud_burst_A4 Qrob_Chr01 1 s_1DFK66_275 s_1AMVCC_444 3,3 0 7,3 lod 9,4 14,8
Bourran2_2014_nSeqBC*_A4 Qrob_Chr01 1 s_1CFE4C_2114 s_1BDNCB_819 15,25 2 28,5 lod 2,9903 8,3

0 Targeting