Protein : Qrob_P0472600.2 Q. robur
Protein Identifier  ? Qrob_P0472600.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) PF10716 - NADH dehydrogenase transmembrane subunit Gene Prediction Quality  validated
Protein length 

Sequence

Length: 189  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0055114 oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor Catalysis of an oxidation-reduction (redox) reaction in which NADH or NADPH acts as a hydrogen or electron donor and reduces a quinone or a similar acceptor molecule.

21 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100259429 2 185 + 184 Gaps:2 96.81 188 73.08 8e-88 uncharacterized LOC100259429
blastp_kegg lcl|pmum:103321412 2 186 + 185 Gaps:6 97.34 188 69.40 6e-82 uncharacterized LOC103321412
blastp_kegg lcl|tcc:TCM_010968 2 185 + 184 Gaps:4 96.41 195 67.55 2e-78 Inorganic carbon transport protein-related putative isoform 1
blastp_kegg lcl|rcu:RCOM_0629280 1 185 + 185 Gaps:3 97.33 187 65.38 9e-77 hypothetical protein
blastp_kegg lcl|pper:PRUPE_ppa025736mg 41 186 + 146 Gaps:1 99.32 148 73.47 2e-73 hypothetical protein
blastp_kegg lcl|pop:POPTR_0010s12050g 2 185 + 184 Gaps:3 96.79 187 62.43 1e-70 POPTRDRAFT_822072 inorganic carbon transport family protein
blastp_kegg lcl|pxb:103943041 2 186 + 185 Gaps:4 97.34 188 67.21 1e-70 uncharacterized LOC103943041
blastp_kegg lcl|eus:EUTSA_v10019160mg 24 185 + 162 Gaps:5 83.92 199 61.68 2e-67 hypothetical protein
blastp_kegg lcl|gmx:100526956 2 185 + 184 Gaps:7 95.90 195 57.75 4e-67 uncharacterized LOC100526956
blastp_kegg lcl|aly:ARALYDRAFT_894894 1 188 + 188 Gaps:3 96.86 191 56.76 2e-66 hypothetical protein
blastp_uniprot_sprot sp|Q8DKZ3|NDHL_THEEB 84 154 + 71 none 93.42 76 42.25 3e-10 NAD(P)H-quinone oxidoreductase subunit L OS Thermosynechococcus elongatus (strain BP-1) GN ndhL PE 1 SV 1
blastp_uniprot_sprot sp|Q3AKY6|NDHL_SYNSC 85 149 + 65 none 78.31 83 36.92 8e-09 NAD(P)H-quinone oxidoreductase subunit L OS Synechococcus sp. (strain CC9605) GN ndhL PE 3 SV 1
blastp_uniprot_sprot sp|Q46LY0|NDHL_PROMT 86 156 + 71 none 79.78 89 36.62 3e-08 NAD(P)H-quinone oxidoreductase subunit L OS Prochlorococcus marinus (strain NATL2A) GN ndhL PE 3 SV 1
blastp_uniprot_sprot sp|Q8YMW5|NDHL_NOSS1 101 154 + 54 none 77.14 70 40.74 1e-07 NAD(P)H-quinone oxidoreductase subunit L OS Nostoc sp. (strain PCC 7120 / UTEX 2576) GN ndhL PE 3 SV 1
blastp_uniprot_sprot sp|B1X3F0|NDHL_PAUCH 89 149 + 61 none 73.49 83 37.70 1e-07 NAD(P)H-quinone oxidoreductase subunit L organellar chromatophore OS Paulinella chromatophora GN ndhL PE 3 SV 1
blastp_uniprot_sprot sp|Q3MBD4|NDHL_ANAVT 101 154 + 54 none 77.14 70 42.59 2e-07 NAD(P)H-quinone oxidoreductase subunit L OS Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN ndhL PE 3 SV 1
blastp_uniprot_sprot sp|Q3AYG7|NDHL_SYNS9 85 149 + 65 none 78.31 83 33.85 4e-07 NAD(P)H-quinone oxidoreductase subunit L OS Synechococcus sp. (strain CC9902) GN ndhL PE 3 SV 1
blastp_uniprot_sprot sp|Q7V897|NDHL_PROMM 86 149 + 64 none 77.11 83 32.81 5e-07 NAD(P)H-quinone oxidoreductase subunit L OS Prochlorococcus marinus (strain MIT 9313) GN ndhL PE 3 SV 2
blastp_uniprot_sprot sp|A2C127|NDHL_PROM1 86 156 + 71 none 79.78 89 33.80 9e-07 NAD(P)H-quinone oxidoreductase subunit L OS Prochlorococcus marinus (strain NATL1A) GN ndhL PE 3 SV 1
blastp_uniprot_sprot sp|A2CAP6|NDHL_PROM3 86 149 + 64 none 77.11 83 32.81 3e-06 NAD(P)H-quinone oxidoreductase subunit L OS Prochlorococcus marinus (strain MIT 9303) GN ndhL PE 3 SV 2
rpsblast_cdd gnl|CDD|151207 86 155 + 70 none 90.91 77 40.00 5e-20 pfam10716 NdhL NADH dehydrogenase transmembrane subunit. The NdhL family is a component of the NDH-1L complex that is one of the proton-pumping NADH:ubiquinone oxidoreductases that catalyze the electron transfer from NADH to ubiquinone linked with proton translocation across the membrane. NDH-1L is essential for photoheterotrophic cell growth. NdhL appears to contain two transmembrane helices and it is necessary for the functioning of though not the correct assembly of the NDH-1 complex in Synechocystis 6803. The conservation between cyanobacteria and green plants suggests that chloroplast NDH-1 complexes contain related subunits.

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 114 124 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 90 113 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 85 89 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 1 59 59 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 125 145 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 146 188 43 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 60 84 25 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Pfam 65 154 90 PF10716 none NADH dehydrogenase transmembrane subunit IPR019654

3 Localization

Analysis Start End Length
TMHMM 88 110 22
TMHMM 59 81 22
TMHMM 125 147 22

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5

0 Targeting