Protein : Qrob_P0469500.2 Q. robur
Protein Identifier  ? Qrob_P0469500.2 Organism . Name  Quercus robur
Score  35.8 Score Type  egn
Protein Description  (M=5) K03265 - peptide chain release factor eRF subunit 1 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 438  
Kegg Orthology  K03265
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0005737 cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO:0006415 translational termination The process resulting in the release of a polypeptide chain from the ribosome, usually in response to a termination codon (UAA, UAG, or UGA in the universal genetic code).
GO:0016149 translation release factor activity, codon specific A translation release factor that is specific for one or more particular termination codons; acts at the ribosomal A-site and require polypeptidyl-tRNA at the P-site.

39 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_047036 1 437 + 437 none 100.00 437 96.80 0.0 Eukaryotic release factor 1-3
blastp_kegg lcl|gmx:100786788 1 437 + 437 none 100.00 437 96.11 0.0 eukaryotic peptide chain release factor subunit 1-3-like
blastp_kegg lcl|vvi:100242471 1 437 + 437 none 100.00 437 95.65 0.0 eukaryotic peptide chain release factor subunit 1-3-like
blastp_kegg lcl|pop:POPTR_0014s13720g 1 437 + 437 Gaps:1 100.00 436 96.10 0.0 POPTRDRAFT_732023 hypothetical protein
blastp_kegg lcl|vvi:100248954 1 437 + 437 none 100.00 437 95.65 0.0 eukaryotic peptide chain release factor subunit 1-3-like
blastp_kegg lcl|pper:PRUPE_ppa005931mg 1 437 + 437 none 100.00 437 95.42 0.0 hypothetical protein
blastp_kegg lcl|cmo:103489959 1 437 + 437 Gaps:1 100.00 436 96.10 0.0 eukaryotic peptide chain release factor subunit 1-3
blastp_kegg lcl|csv:101218139 1 437 + 437 Gaps:1 100.00 436 96.10 0.0 eukaryotic peptide chain release factor subunit 1-3-like
blastp_kegg lcl|pmum:103330410 1 437 + 437 none 100.00 437 95.19 0.0 eukaryotic peptide chain release factor subunit 1-3
blastp_kegg lcl|csv:101224002 1 437 + 437 Gaps:1 100.00 436 96.10 0.0 eukaryotic peptide chain release factor subunit 1-3-like
blastp_pdb 1dt9_A 3 437 + 435 Gaps:2 99.08 437 76.44 0.0 mol:protein length:437 PROTEIN (EUKARYOTIC PEPTIDE CHAIN RELEASE FAC
blastp_pdb 3e1y_D 3 437 + 435 Gaps:2 96.01 451 76.44 0.0 mol:protein length:451 Eukaryotic peptide chain release factor subun
blastp_pdb 3e1y_C 3 437 + 435 Gaps:2 96.01 451 76.44 0.0 mol:protein length:451 Eukaryotic peptide chain release factor subun
blastp_pdb 3e1y_B 3 437 + 435 Gaps:2 96.01 451 76.44 0.0 mol:protein length:451 Eukaryotic peptide chain release factor subun
blastp_pdb 3e1y_A 3 437 + 435 Gaps:2 96.01 451 76.44 0.0 mol:protein length:451 Eukaryotic peptide chain release factor subun
blastp_pdb 3e20_K 4 437 + 434 Gaps:8 97.96 441 63.19 0.0 mol:protein length:441 Eukaryotic peptide chain release factor subun
blastp_pdb 3e20_H 4 437 + 434 Gaps:8 97.96 441 63.19 0.0 mol:protein length:441 Eukaryotic peptide chain release factor subun
blastp_pdb 3e20_B 4 437 + 434 Gaps:8 97.96 441 63.19 0.0 mol:protein length:441 Eukaryotic peptide chain release factor subun
blastp_pdb 3e20_C 4 437 + 434 Gaps:8 97.96 441 63.19 0.0 mol:protein length:441 Eukaryotic peptide chain release factor subun
blastp_pdb 2lgt_A 3 139 + 137 none 95.14 144 83.21 1e-77 mol:protein length:144 Eukaryotic peptide chain release factor subun
blastp_uniprot_sprot sp|P35614|ERF1Z_ARATH 1 437 + 437 Gaps:2 100.00 435 91.95 0.0 Eukaryotic peptide chain release factor subunit 1-3 OS Arabidopsis thaliana GN ERF1-3 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LPV8|ERF1Y_ARATH 4 437 + 434 Gaps:1 99.77 434 90.53 0.0 Eukaryotic peptide chain release factor subunit 1-2 OS Arabidopsis thaliana GN ERF1-2 PE 2 SV 1
blastp_uniprot_sprot sp|Q39097|ERF1X_ARATH 1 435 + 435 Gaps:2 99.31 436 88.22 0.0 Eukaryotic peptide chain release factor subunit 1-1 OS Arabidopsis thaliana GN ERF1-1 PE 2 SV 2
blastp_uniprot_sprot sp|Q9GR88|ERF1_POLMI 1 424 + 424 Gaps:3 97.24 435 78.25 0.0 Eukaryotic peptide chain release factor subunit 1 OS Polyandrocarpa misakiensis GN ERF1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9VPH7|ERF1_DROME 7 430 + 424 Gaps:9 97.03 438 77.88 0.0 Eukaryotic peptide chain release factor subunit 1 OS Drosophila melanogaster GN eRF1 PE 1 SV 2
blastp_uniprot_sprot sp|Q5U2Q7|ERF1_RAT 3 437 + 435 Gaps:2 99.08 437 76.44 0.0 Eukaryotic peptide chain release factor subunit 1 OS Rattus norvegicus GN Etf1 PE 2 SV 3
blastp_uniprot_sprot sp|P62497|ERF1_RABIT 3 437 + 435 Gaps:2 99.08 437 76.44 0.0 Eukaryotic peptide chain release factor subunit 1 OS Oryctolagus cuniculus GN ETF1 PE 1 SV 3
blastp_uniprot_sprot sp|Q8BWY3|ERF1_MOUSE 3 437 + 435 Gaps:2 99.08 437 76.44 0.0 Eukaryotic peptide chain release factor subunit 1 OS Mus musculus GN Etf1 PE 1 SV 4
blastp_uniprot_sprot sp|P62496|ERF1_MESAU 3 437 + 435 Gaps:2 99.08 437 76.44 0.0 Eukaryotic peptide chain release factor subunit 1 OS Mesocricetus auratus GN ETF1 PE 1 SV 3
blastp_uniprot_sprot sp|P62495|ERF1_HUMAN 3 437 + 435 Gaps:2 99.08 437 76.44 0.0 Eukaryotic peptide chain release factor subunit 1 OS Homo sapiens GN ETF1 PE 1 SV 3

12 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 281 418 138 PF03465 none eRF1 domain 3 IPR005142
Gene3D 279 436 158 G3DSA:3.30.1330.30 none none IPR029064
PANTHER 1 437 437 PTHR10113 none none IPR004403
SUPERFAMILY 6 140 135 SSF55481 none none IPR024049
Pfam 144 278 135 PF03464 none eRF1 domain 2 IPR005141
SUPERFAMILY 278 420 143 SSF55315 none none IPR029064
Pfam 7 139 133 PF03463 none eRF1 domain 1 IPR005140
PANTHER 1 437 437 PTHR10113:SF7 none none none
SUPERFAMILY 142 276 135 SSF53137 none none none
Gene3D 27 131 105 G3DSA:3.30.960.10 none none IPR024049
Gene3D 142 278 137 G3DSA:3.30.420.60 none none none
TIGRFAM 12 417 406 TIGR03676 none aRF1/eRF1: peptide chain release factor 1, archaeal and eukaryotic forms IPR004403

0 Localization

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC_3P Qrob_Chr05 5 s_2GDU0O_517 s_1BT8O3_239 25,81 0 55,45 lod 2,2101 5,5

0 Targeting