Protein : Qrob_P0466840.2 Q. robur
Protein Identifier  ? Qrob_P0466840.2 Organism . Name  Quercus robur
Score  99.0 Score Type  egn
Protein Description  (M=1) K15033 - peptidyl-tRNA hydrolase ICT1 [EC:3.1.1.29] Code Enzyme  EC:3.1.1.29
Gene Prediction Quality  validated Protein length 

Sequence

Length: 316  
Kegg Orthology  K15033
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0006415 translational termination The process resulting in the release of a polypeptide chain from the ribosome, usually in response to a termination codon (UAA, UAG, or UGA in the universal genetic code).
GO:0003747 translation release factor activity Involved in catalyzing the release of a nascent polypeptide chain from a ribosome.

21 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0003s11480g 35 248 + 214 Gaps:30 98.69 229 68.58 7e-86 POPTRDRAFT_646490 hypothetical protein
blastp_kegg lcl|tcc:TCM_016077 35 248 + 214 Gaps:21 98.71 232 66.81 2e-84 Class I peptide chain release factor
blastp_kegg lcl|cmo:103490933 35 248 + 214 Gaps:23 98.71 232 66.38 9e-84 peptidyl-tRNA hydrolase ICT1 mitochondrial
blastp_kegg lcl|csv:101203339 35 248 + 214 Gaps:23 97.45 235 65.50 1e-82 peptidyl-tRNA hydrolase ICT1 mitochondrial-like
blastp_kegg lcl|pxb:103952286 35 248 + 214 Gaps:27 98.66 224 68.33 3e-82 peptidyl-tRNA hydrolase ICT1 mitochondrial
blastp_kegg lcl|pmum:103337267 35 248 + 214 Gaps:27 98.65 222 67.58 4e-82 peptidyl-tRNA hydrolase ICT1 mitochondrial
blastp_kegg lcl|rcu:RCOM_1680630 78 247 + 170 Gaps:15 77.35 234 76.80 4e-82 immature colon carcinoma transcript putative
blastp_kegg lcl|pper:PRUPE_ppa011147mg 35 248 + 214 Gaps:27 98.65 222 67.58 1e-81 hypothetical protein
blastp_kegg lcl|vvi:100265433 35 248 + 214 Gaps:27 98.70 230 64.32 2e-81 peptidyl-tRNA hydrolase ICT1 mitochondrial-like
blastp_kegg lcl|mdm:103408295 35 248 + 214 Gaps:21 98.68 228 65.33 2e-79 peptidyl-tRNA hydrolase ICT1 mitochondrial-like
blastp_pdb 1j26_A 128 205 + 78 Gaps:13 81.25 112 37.36 3e-08 mol:protein length:112 immature colon carcinoma transcript 1
blastp_uniprot_sprot sp|B5XAM2|ICT1_SALSA 112 245 + 134 Gaps:18 74.35 191 36.62 1e-13 Peptidyl-tRNA hydrolase ICT1 mitochondrial OS Salmo salar GN ict1 PE 2 SV 1
blastp_uniprot_sprot sp|Q8R035|ICT1_MOUSE 128 245 + 118 Gaps:21 63.59 206 37.40 2e-13 Peptidyl-tRNA hydrolase ICT1 mitochondrial OS Mus musculus GN Ict1 PE 1 SV 1
blastp_uniprot_sprot sp|D2HD32|ICT1_AILME 120 245 + 126 Gaps:21 67.48 206 33.81 2e-12 Peptidyl-tRNA hydrolase ICT1 mitochondrial OS Ailuropoda melanoleuca GN ICT1 PE 3 SV 1
blastp_uniprot_sprot sp|Q14197|ICT1_HUMAN 128 245 + 118 Gaps:21 63.59 206 35.11 4e-12 Peptidyl-tRNA hydrolase ICT1 mitochondrial OS Homo sapiens GN ICT1 PE 1 SV 1
blastp_uniprot_sprot sp|Q3T116|ICT1_BOVIN 120 245 + 126 Gaps:21 67.48 206 34.53 2e-11 Peptidyl-tRNA hydrolase ICT1 mitochondrial OS Bos taurus GN ICT1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9HDZ3|MUG82_SCHPO 131 231 + 101 Gaps:27 64.84 182 38.14 6e-08 Meiotically up-regulated gene 82 protein OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN mug82 PE 1 SV 1
blastp_uniprot_sprot sp|P45388|ARFB_PSEPU 117 244 + 128 Gaps:23 94.16 137 36.43 3e-07 Peptidyl-tRNA hydrolase ArfB OS Pseudomonas putida GN arfB PE 3 SV 1
rpsblast_cdd gnl|CDD|181730 137 250 + 114 Gaps:28 86.96 138 39.17 6e-16 PRK09256 PRK09256 hypothetical protein Provisional.
rpsblast_cdd gnl|CDD|31379 127 247 + 121 Gaps:20 53.97 239 27.91 2e-08 COG1186 PrfB Protein chain release factor B [Translation ribosomal structure and biogenesis].
rpsblast_kog gnl|CDD|38639 127 249 + 123 Gaps:14 79.65 172 45.26 3e-26 KOG3429 KOG3429 KOG3429 Predicted peptidyl-tRNA hydrolase [Translation ribosomal structure and biogenesis].

5 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 128 229 102 PF00472 none RF-1 domain IPR000352
SUPERFAMILY 123 205 83 SSF110916 none none none
PANTHER 115 246 132 PTHR11075 none none none
Coils 95 123 29 Coil none none none
Gene3D 127 208 82 G3DSA:3.30.160.200 none none none

0 Localization

4 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2015_nP_3P Qrob_Chr12 12 v_10140_295 v_838_303 16 14,69 18,01 lod 5.1 13.7
Bourran2_2015_nSecLBD_3P Qrob_Chr12 12 s_A4YYC_633 s_2F1IZB_703 18,64 18,01 21,53 lod 6.5 17.2
Bourran2_2014_nSeqBC_3P Qrob_Chr12 12 s_1EO8V5_710 s_1A2VMU_355 11,04 0 32,58 lod 1,7196 4,7

0 Targeting