2 GO Terms
| Identifier | Name | Description |
|---|---|---|
| GO:0005789 | endoplasmic reticulum membrane | The lipid bilayer surrounding the endoplasmic reticulum. |
| GO:0007029 | endoplasmic reticulum organization | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the endoplasmic reticulum. |
11 Blast
| Analysis | Hit | Start | End | Strand | Length | Note | Hit Coverage | Hit Length | Hit Pident | E Val | Hit Description |
|---|---|---|---|---|---|---|---|---|---|---|---|
| blastp_kegg | lcl|pper:PRUPE_ppa012396mg | 1 | 171 | + | 171 | none | 100.00 | 171 | 69.59 | 9e-77 | hypothetical protein |
| blastp_kegg | lcl|pmum:103333342 | 1 | 171 | + | 171 | Gaps:1 | 100.00 | 172 | 69.19 | 6e-76 | uncharacterized LOC103333342 |
| blastp_kegg | lcl|pxb:103959836 | 1 | 171 | + | 171 | Gaps:1 | 100.00 | 172 | 68.02 | 5e-75 | uncharacterized LOC103959836 |
| blastp_kegg | lcl|pxb:103961965 | 1 | 171 | + | 171 | Gaps:1 | 100.00 | 172 | 67.44 | 2e-74 | uncharacterized LOC103961965 |
| blastp_kegg | lcl|mdm:103439644 | 1 | 171 | + | 171 | Gaps:1 | 100.00 | 172 | 66.86 | 4e-74 | uncharacterized LOC103439644 |
| blastp_kegg | lcl|mdm:103424104 | 1 | 171 | + | 171 | Gaps:1 | 100.00 | 172 | 65.12 | 3e-70 | uncharacterized LOC103424104 |
| blastp_kegg | lcl|vvi:100267239 | 1 | 171 | + | 171 | Gaps:3 | 100.00 | 174 | 62.64 | 6e-68 | uncharacterized LOC100267239 |
| blastp_kegg | lcl|pop:POPTR_0012s14600g | 1 | 171 | + | 171 | Gaps:3 | 100.00 | 170 | 64.71 | 2e-67 | POPTRDRAFT_662465 hypothetical protein |
| blastp_kegg | lcl|csv:101231891 | 1 | 171 | + | 171 | Gaps:1 | 100.00 | 172 | 62.79 | 1e-65 | uncharacterized LOC101231891 |
| blastp_kegg | lcl|csv:101211693 | 1 | 171 | + | 171 | Gaps:1 | 100.00 | 172 | 62.79 | 1e-65 | uncharacterized LOC101211693 |
| rpsblast_kog | gnl|CDD|39257 | 1 | 170 | + | 170 | Gaps:13 | 97.81 | 183 | 24.02 | 1e-19 | KOG4054 KOG4054 KOG4054 Uncharacterized conserved protein [Function unknown]. |
11 Domain Motifs
| Analysis | Begin | End | Length | Domain Identifier | Cross Ref | Description | Inter Pro |
|---|---|---|---|---|---|---|---|
| Phobius | 87 | 97 | 11 | CYTOPLASMIC_DOMAIN | none | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | none |
| Phobius | 39 | 62 | 24 | TRANSMEMBRANE | none | Region of a membrane-bound protein predicted to be embedded in the membrane. | none |
| Phobius | 122 | 140 | 19 | NON_CYTOPLASMIC_DOMAIN | none | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | none |
| Phobius | 1 | 38 | 38 | CYTOPLASMIC_DOMAIN | none | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | none |
| Phobius | 98 | 121 | 24 | TRANSMEMBRANE | none | Region of a membrane-bound protein predicted to be embedded in the membrane. | none |
| Pfam | 10 | 120 | 111 | PF07086 | none | Protein of unknown function (DUF1352) | IPR009787 |
| Phobius | 63 | 67 | 5 | NON_CYTOPLASMIC_DOMAIN | none | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | none |
| Phobius | 68 | 86 | 19 | TRANSMEMBRANE | none | Region of a membrane-bound protein predicted to be embedded in the membrane. | none |
| PANTHER | 2 | 171 | 170 | PTHR20955 | none | none | IPR009787 |
| Phobius | 162 | 171 | 10 | CYTOPLASMIC_DOMAIN | none | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | none |
| Phobius | 141 | 161 | 21 | TRANSMEMBRANE | none | Region of a membrane-bound protein predicted to be embedded in the membrane. | none |
4 Localization
| Analysis | Start | End | Length |
|---|---|---|---|
| TMHMM | 93 | 115 | 22 |
| TMHMM | 37 | 59 | 22 |
| TMHMM | 140 | 162 | 22 |
| TMHMM | 69 | 86 | 17 |
10 Qtllist
| Qtl Name | Chromosome Name | Linkage Group | Prox Marker | Dist Marker | Position QTL | Pos One | Pos Two | Test Type | Test Value | R 2 |
|---|---|---|---|---|---|---|---|---|---|---|
| Bourran1_2004_QTL4_peak_Bud_burst_A4 | Qrob_Chr09 | 9 | s_1BY6BQ_440 | s_1AOIKO_756 | 16,45 | 0 | 27,45 | lod | 4,5 | 10,6 |
| Bourran_2000_2002_QTL7_Delta.F | Qrob_Chr09 | 9 | v_5944_442 | s_1BA1PC_866 | 23.51 | 10,96 | 35,74 | lod | 4.1466 | 0.041 |
| Bourran2_2003_QTL11_peak_Bud_burst_3P | Qrob_Chr09 | 9 | s_1CGP2H_273 | v_15801_330 | 27,16 | 4,16 | 48,16 | lod | 2,3 | 5,1 |
| Bourran2_2004_QTL12_peak_Bud_burst_3P | Qrob_Chr09 | 9 | s_1BDO6G_250 | s_1A83AM_496 | 34,31 | 9,31 | 44,31 | lod | 3,6 | 7,6 |
| Bourran2_2004_QTL14_peak_Bud_burst_A4 | Qrob_Chr09 | 9 | s_1BY6BQ_440 | s_1AOIKO_756 | 16,83 | 10,33 | 22,33 | lod | 3,8 | 9 |
| Bourran2_2015_nEpis_A4 | Qrob_Chr09 | 9 | v_15847_485 | v_8329_369 | 34,94 | 34,88 | 37,45 | lod | 3.1 | 7 |
| Bourran2_2015_nSecLBD_A4 | Qrob_Chr09 | 9 | v_15847_485 | v_8329_369 | 35,81 | 34,88 | 37,45 | lod | 4.4 | 10.4 |
| PM_1999_QTL15_peak_Bud_burst_3P | Qrob_Chr09 | 9 | s_1CGP2H_273 | v_15801_330 | 27,16 | 9,16 | 47,16 | lod | 3,6 | 6,5 |
| Bourran1_2003_QTL5_peak_Bud_burst_3P | Qrob_Chr09 | 9 | s_1ATM17_504 | s_1AYZFM_899 | 29,81 | 19,81 | 41,81 | lod | 3,3 | 8,9 |
| NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL8_d13Cf | Qrob_Chr09 | 9 | s_1C1GRV_1289 | s_1BXT7R_864 | 29.91 | 0 | 47,18 | lod | 7.0997 | 0.044 |
