Protein : Qrob_P0464470.2 Q. robur
Protein Identifier  ? Qrob_P0464470.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K05019 - chloride channel, nucleotide-sensitive, 1A Gene Prediction Quality  validated
Protein length 

Sequence

Length: 228  
Kegg Orthology  K05019
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0 Synonyms

7 GO Terms

Identifier Name Description
GO:0005829 cytosol The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
GO:0005886 plasma membrane The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
GO:0000387 spliceosomal snRNP assembly The aggregation, arrangement and bonding together of one or more snRNA and multiple protein components to form a ribonucleoprotein complex that is involved in formation of the spliceosome.
GO:0006821 chloride transport The directed movement of chloride into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO:0006884 cell volume homeostasis Any process involved in maintaining the steady state of a cell's volume. The cell's volume refers to the three-dimensional space occupied by a cell.
GO:0034709 methylosome A large (20 S) protein complex that possesses protein arginine methyltransferase activity and modifies specific arginines to dimethylarginines in the arginine- and glycine-rich domains of several spliceosomal Sm proteins, thereby targeting these proteins to the survival of motor neurons (SMN) complex for assembly into small nuclear ribonucleoprotein (snRNP) core particles. Proteins found in the methylosome include the methyltransferase JBP1 (PRMT5), pICln (CLNS1A), MEP50 (WDR77), and unmethylated forms of SM proteins that have RG domains.
GO:0034715 pICln-Sm protein complex A protein complex that contains pICln (CLNS1A) and several Sm proteins, including SmD1, SmD2, SmE, SmF, and SmG.

22 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0012s14450g 1 227 + 227 Gaps:4 100.00 231 77.06 3e-124 POPTRDRAFT_570580 nucleotide-sensitive chloride conductance regulator family protein
blastp_kegg lcl|tcc:TCM_047012 1 219 + 219 Gaps:3 94.87 234 80.18 3e-117 Nucleotide-sensitive chloride conductance regulator (ICln) family protein
blastp_kegg lcl|pop:POPTR_0015s14500g 1 227 + 227 Gaps:6 100.00 231 76.62 6e-113 POPTRDRAFT_824873 nucleotide-sensitive chloride conductance regulator family protein
blastp_kegg lcl|rcu:RCOM_1499680 1 226 + 226 Gaps:4 100.00 230 72.61 2e-109 Methylosome subunit pICln putative
blastp_kegg lcl|vvi:100248089 1 226 + 226 Gaps:3 99.57 230 73.36 3e-109 uncharacterized LOC100248089
blastp_kegg lcl|pper:PRUPE_ppa010981mg 1 227 + 227 Gaps:5 100.00 228 75.88 1e-108 hypothetical protein
blastp_kegg lcl|pmum:103333326 1 227 + 227 Gaps:5 100.00 228 73.68 9e-107 chloride conductance regulatory protein ICln
blastp_kegg lcl|cit:102619652 1 227 + 227 Gaps:3 100.00 230 72.61 5e-104 chloride conductance regulatory protein ICln-like
blastp_kegg lcl|cic:CICLE_v10005797mg 1 227 + 227 Gaps:3 100.00 230 72.61 7e-104 hypothetical protein
blastp_kegg lcl|pxb:103963424 1 227 + 227 Gaps:3 100.00 230 71.74 8e-102 chloride conductance regulatory protein ICln-like
blastp_pdb 1zyi_A 49 151 + 103 Gaps:2 59.06 171 37.62 5e-16 mol:protein length:171 Methylosome subunit pICln
blastp_uniprot_sprot sp|Q9LVA7|ICLN_ARATH 1 227 + 227 Gaps:10 100.00 229 69.00 7e-92 Chloride conductance regulatory protein ICln OS Arabidopsis thaliana GN At5g62290 PE 2 SV 1
blastp_uniprot_sprot sp|Q61189|ICLN_MOUSE 49 151 + 103 Gaps:3 43.22 236 40.20 1e-15 Methylosome subunit pICln OS Mus musculus GN Clns1a PE 2 SV 1
blastp_uniprot_sprot sp|Q28678|ICLN_RABIT 27 151 + 125 Gaps:4 52.12 236 37.40 1e-15 Methylosome subunit pICln OS Oryctolagus cuniculus GN CLNS1A PE 2 SV 2
blastp_uniprot_sprot sp|Q04753|ICLN_RAT 49 151 + 103 Gaps:3 43.22 236 40.20 2e-15 Methylosome subunit pICln OS Rattus norvegicus GN Clns1a PE 2 SV 1
blastp_uniprot_sprot sp|P35521|ICLN_CANFA 25 151 + 127 Gaps:3 52.77 235 35.48 2e-15 Methylosome subunit pICln OS Canis familiaris GN CLNS1A PE 1 SV 1
blastp_uniprot_sprot sp|P54106|ICLN_XENLA 32 151 + 120 Gaps:10 51.45 241 33.87 3e-14 Methylosome subunit pICln OS Xenopus laevis GN clns1a PE 2 SV 1
blastp_uniprot_sprot sp|A1ZAW5|ICLN_DROME 29 217 + 189 Gaps:49 93.95 215 28.22 1e-11 Methylosome subunit pICln OS Drosophila melanogaster GN icln PE 1 SV 1
blastp_uniprot_sprot sp|P54105|ICLN_HUMAN 26 151 + 126 Gaps:5 52.74 237 32.80 7e-11 Methylosome subunit pICln OS Homo sapiens GN CLNS1A PE 1 SV 1
blastp_uniprot_sprot sp|Q5R719|ICLN_PONAB 26 151 + 126 Gaps:5 52.74 237 32.80 8e-11 Methylosome subunit pICln OS Pongo abelii GN CLNS1A PE 2 SV 1
rpsblast_cdd gnl|CDD|202675 49 151 + 103 Gaps:6 100.00 97 45.36 2e-28 pfam03517 ICln_channel Nucleotide-sensitive chloride conductance regulator (ICln). ICln is a ubiquitously expressed multi-functional protein that plays a critical role in regulating volume decrease in cells after cellular swelling. In plants ICln induces Cl- currents thus regulating Cl- homoeostasis in eukaryotes. Structurally the fold resembles a pleckstrin homology fold on of whose roles is to recruit and tether their host protein to the cell membrane and although the surface charges of the ICln fold are not equivalent to those of the PH domain ICln can be phosphorylated in vitro and the PH-nature of the domain may be the part involving it in the transposition from cytosol to cell membrane during cytotonic swelling.
rpsblast_kog gnl|CDD|38448 8 227 + 220 Gaps:10 100.00 216 28.24 2e-35 KOG3238 KOG3238 KOG3238 Chloride ion current inducer protein [Inorganic ion transport and metabolism].

5 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 1 226 226 PTHR21399 none none IPR003521
PRINTS 46 61 16 PR01348 none Nucleotide-sensitive chloride conductance regulator (ICln) signature IPR003521
PRINTS 121 133 13 PR01348 none Nucleotide-sensitive chloride conductance regulator (ICln) signature IPR003521
PRINTS 69 83 15 PR01348 none Nucleotide-sensitive chloride conductance regulator (ICln) signature IPR003521
Pfam 49 162 114 PF03517 none Regulator of volume decrease after cellular swelling none

0 Localization

10 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL4_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,45 0 27,45 lod 4,5 10,6
Bourran_2000_2002_QTL7_Delta.F Qrob_Chr09 9 v_5944_442 s_1BA1PC_866 23.51 10,96 35,74 lod 4.1466 0.041
Bourran2_2003_QTL11_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 4,16 48,16 lod 2,3 5,1
Bourran2_2004_QTL12_peak_Bud_burst_3P Qrob_Chr09 9 s_1BDO6G_250 s_1A83AM_496 34,31 9,31 44,31 lod 3,6 7,6
Bourran2_2004_QTL14_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,83 10,33 22,33 lod 3,8 9
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
PM_1999_QTL15_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 9,16 47,16 lod 3,6 6,5
Bourran1_2003_QTL5_peak_Bud_burst_3P Qrob_Chr09 9 s_1ATM17_504 s_1AYZFM_899 29,81 19,81 41,81 lod 3,3 8,9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL8_d13Cf Qrob_Chr09 9 s_1C1GRV_1289 s_1BXT7R_864 29.91 0 47,18 lod 7.0997 0.044

0 Targeting