Protein : Qrob_P0460410.2 Q. robur
Protein Identifier  ? Qrob_P0460410.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) PTHR10055//PTHR10055:SF4 - TRYPTOPHANYL-TRNA SYNTHETASE // SUBFAMILY NOT NAMED Code Enzyme  EC:6.1.1.2
Gene Prediction Quality  validated Protein length 

Sequence

Length: 415  
Kegg Orthology  K01867
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0 Synonyms

7 GO Terms

Identifier Name Description
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0005737 cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO:0000166 nucleotide binding Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO:0004812 aminoacyl-tRNA ligase activity Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP.
GO:0006418 tRNA aminoacylation for protein translation The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis.
GO:0004830 tryptophan-tRNA ligase activity Catalysis of the reaction: ATP + L-tryptophan + tRNA(Trp) = AMP + diphosphate + L-tryptophanyl-tRNA(Trp).
GO:0006436 tryptophanyl-tRNA aminoacylation The process of coupling tryptophan to tryptophanyl-tRNA, catalyzed by tryptophanyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA.

41 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|fve:101296539 1 414 + 414 Gaps:8 100.00 418 82.54 0.0 tryptophan--tRNA ligase-like
blastp_kegg lcl|vvi:100262715 1 414 + 414 Gaps:8 100.00 416 83.17 0.0 tryptophanyl-tRNA synthetase-like
blastp_kegg lcl|csv:101219148 1 414 + 414 Gaps:2 100.00 414 81.64 0.0 tryptophan--tRNA ligase-like
blastp_kegg lcl|cmo:103503609 1 414 + 414 Gaps:2 100.00 414 81.40 0.0 tryptophan--tRNA ligase mitochondrial
blastp_kegg lcl|pxb:103957071 1 414 + 414 Gaps:7 100.00 417 80.34 0.0 tryptophan--tRNA ligase mitochondrial
blastp_kegg lcl|cic:CICLE_v10010686mg 1 414 + 414 Gaps:9 100.00 419 83.05 0.0 hypothetical protein
blastp_kegg lcl|mdm:103431315 1 414 + 414 Gaps:9 100.00 417 80.58 0.0 tryptophan--tRNA ligase mitochondrial-like
blastp_kegg lcl|sly:101244069 1 414 + 414 Gaps:2 100.00 412 80.34 0.0 tryptophan--tRNA ligase-like
blastp_kegg lcl|sot:102598687 1 414 + 414 Gaps:2 100.00 412 80.10 0.0 tryptophan--tRNA ligase mitochondrial-like
blastp_kegg lcl|cit:102623930 1 414 + 414 Gaps:17 100.00 427 81.50 0.0 tryptophan--tRNA ligase mitochondrial-like
blastp_pdb 3fhj_F 74 414 + 341 Gaps:15 99.39 328 50.61 1e-100 mol:protein length:328 Tryptophanyl-tRNA synthetase
blastp_pdb 3fhj_E 74 414 + 341 Gaps:15 99.39 328 50.61 1e-100 mol:protein length:328 Tryptophanyl-tRNA synthetase
blastp_pdb 3fhj_C 74 414 + 341 Gaps:15 99.39 328 50.61 1e-100 mol:protein length:328 Tryptophanyl-tRNA synthetase
blastp_pdb 3fhj_B 74 414 + 341 Gaps:15 99.39 328 50.61 1e-100 mol:protein length:328 Tryptophanyl-tRNA synthetase
blastp_pdb 3fhj_D 74 414 + 341 Gaps:15 99.39 328 50.61 1e-100 mol:protein length:328 Tryptophanyl-tRNA synthetase
blastp_pdb 3fhj_A 74 414 + 341 Gaps:15 99.39 328 50.61 1e-100 mol:protein length:328 Tryptophanyl-tRNA synthetase
blastp_pdb 2ov4_A 74 414 + 341 Gaps:15 99.39 328 50.61 1e-100 mol:protein length:328 Tryptophanyl-tRNA synthetase
blastp_pdb 1mb2_F 74 414 + 341 Gaps:15 99.39 328 50.61 1e-100 mol:protein length:328 TRYPTOPHAN-TRNA LIGASE
blastp_pdb 1mb2_E 74 414 + 341 Gaps:15 99.39 328 50.61 1e-100 mol:protein length:328 TRYPTOPHAN-TRNA LIGASE
blastp_pdb 1mb2_D 74 414 + 341 Gaps:15 99.39 328 50.61 1e-100 mol:protein length:328 TRYPTOPHAN-TRNA LIGASE
blastp_uniprot_sprot sp|Q8DHG3|SYW_THEEB 76 411 + 336 Gaps:9 99.09 330 64.22 5e-148 Tryptophan--tRNA ligase OS Thermosynechococcus elongatus (strain BP-1) GN trpS PE 3 SV 1
blastp_uniprot_sprot sp|Q8YXE4|SYW_NOSS1 73 411 + 339 Gaps:10 98.21 335 60.79 3e-141 Tryptophan--tRNA ligase OS Nostoc sp. (strain PCC 7120 / UTEX 2576) GN trpS PE 3 SV 1
blastp_uniprot_sprot sp|Q7TV34|SYW_PROMM 73 412 + 340 Gaps:10 98.52 337 59.34 1e-137 Tryptophan--tRNA ligase OS Prochlorococcus marinus (strain MIT 9313) GN trpS PE 3 SV 1
blastp_uniprot_sprot sp|Q7VBM9|SYW_PROMA 73 414 + 342 Gaps:10 98.53 339 57.78 4e-133 Tryptophan--tRNA ligase OS Prochlorococcus marinus (strain SARG / CCMP1375 / SS120) GN trpS PE 3 SV 1
blastp_uniprot_sprot sp|Q7TTU9|SYW_SYNPX 73 413 + 341 Gaps:10 98.81 337 58.26 2e-132 Tryptophan--tRNA ligase OS Synechococcus sp. (strain WH8102) GN trpS PE 3 SV 1
blastp_uniprot_sprot sp|P73655|SYW_SYNY3 73 412 + 340 Gaps:9 98.22 337 59.52 1e-130 Tryptophan--tRNA ligase OS Synechocystis sp. (strain PCC 6803 / Kazusa) GN trpS PE 3 SV 2
blastp_uniprot_sprot sp|Q7V286|SYW_PROMP 71 413 + 343 Gaps:11 98.82 338 53.29 9e-128 Tryptophan--tRNA ligase OS Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN trpS PE 3 SV 1
blastp_uniprot_sprot sp|Q7NCG8|SYW_GLOVI 70 412 + 343 Gaps:14 97.92 336 56.84 3e-127 Tryptophan--tRNA ligase OS Gloeobacter violaceus (strain PCC 7421) GN trpS PE 3 SV 1
blastp_uniprot_sprot sp|Q92HR1|SYW_RICCN 72 412 + 341 Gaps:12 99.70 330 50.46 1e-107 Tryptophan--tRNA ligase OS Rickettsia conorii (strain ATCC VR-613 / Malish 7) GN trpS PE 3 SV 1
blastp_uniprot_sprot sp|Q4UL98|SYW_RICFE 72 412 + 341 Gaps:12 99.70 330 49.54 4e-106 Tryptophan--tRNA ligase OS Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN trpS PE 3 SV 1

13 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 73 413 341 PTHR10055 "KEGG:00970+6.1.1.2","Reactome:REACT_71";signature_desc=TRYPTOPHANYL-TRNA SYNTHETASE none IPR002306
Hamap 73 412 340 MF_00140_B "KEGG:00970+6.1.1.2" Tryptophan--tRNA ligase [trpS]. IPR024109
PRINTS 278 288 11 PR01039 "KEGG:00970+6.1.1.2","Reactome:REACT_71" Tryptophanyl-tRNA synthetase signature IPR002306
PRINTS 86 102 17 PR01039 "KEGG:00970+6.1.1.2","Reactome:REACT_71" Tryptophanyl-tRNA synthetase signature IPR002306
PRINTS 136 155 20 PR01039 "KEGG:00970+6.1.1.2","Reactome:REACT_71" Tryptophanyl-tRNA synthetase signature IPR002306
PRINTS 213 234 22 PR01039 "KEGG:00970+6.1.1.2","Reactome:REACT_71" Tryptophanyl-tRNA synthetase signature IPR002306
TIGRFAM 73 411 339 TIGR00233 "KEGG:00970+6.1.1.2","Reactome:REACT_71" trpS: tryptophan--tRNA ligase IPR002306
Gene3D 73 292 220 G3DSA:3.40.50.620 none none IPR014729
Pfam 74 367 294 PF00579 "Reactome:REACT_71" tRNA synthetases class I (W and Y) IPR002305
PANTHER 73 413 341 PTHR10055:SF4 none none none
ProSitePatterns 82 91 10 PS00178 "Reactome:REACT_71" Aminoacyl-transfer RNA synthetases class-I signature. IPR001412
SUPERFAMILY 74 411 338 SSF52374 none none none
Gene3D 293 386 94 G3DSA:1.10.240.10 none none none

0 Localization

1 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4

0 Targeting