Protein : Qrob_P0459620.2 Q. robur
Protein Identifier  ? Qrob_P0459620.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K06001 - tryptophan synthase beta chain [EC:4.2.1.20] Code Enzyme  EC:4.2.1.20
Gene Prediction Quality  validated Protein length 

Sequence

Length: 465  
Kegg Orthology  K06001
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0030170 pyridoxal phosphate binding Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6.
GO:0004834 tryptophan synthase activity Catalysis of the reaction: L-serine + (1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O.
GO:0000162 tryptophan biosynthetic process The chemical reactions and pathways resulting in the formation of tryptophan, the chiral amino acid 2-amino-3-(1H-indol-3-yl)propanoic acid; tryptophan is synthesized from chorismate via anthranilate.

43 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_019615 1 462 + 462 Gaps:2 91.52 507 89.01 0.0 Tryptophan synthase beta type 2
blastp_kegg lcl|pop:POPTR_0017s14220g 2 462 + 461 Gaps:2 91.68 505 88.77 0.0 hypothetical protein
blastp_kegg lcl|cit:102629591 3 464 + 462 none 91.67 504 88.31 0.0 tryptophan synthase-like
blastp_kegg lcl|sot:102588644 4 461 + 458 Gaps:2 93.50 492 86.30 0.0 tryptophan synthase beta chain 2 chloroplastic-like
blastp_kegg lcl|pper:PRUPE_ppa019760mg 4 462 + 459 none 98.50 466 89.98 0.0 hypothetical protein
blastp_kegg lcl|pmum:103329641 4 462 + 459 none 91.43 502 89.54 0.0 tryptophan synthase beta chain 1
blastp_kegg lcl|vvi:100261704 10 464 + 455 Gaps:1 94.41 483 89.04 0.0 tryptophan synthase beta chain 2-like
blastp_kegg lcl|pxb:103960303 1 462 + 462 none 92.03 502 87.88 0.0 tryptophan synthase beta chain 1-like
blastp_kegg lcl|mdm:103404685 1 462 + 462 none 92.03 502 87.01 0.0 tryptophan synthase beta chain 1
blastp_kegg lcl|pda:103712731 1 463 + 463 Gaps:1 92.61 501 83.62 0.0 tryptophan synthase beta chain 1
blastp_pdb 1x1q_B 45 442 + 398 Gaps:52 90.91 418 35.00 4e-34 mol:protein length:418 tryptophan synthase beta chain
blastp_pdb 1x1q_A 45 442 + 398 Gaps:52 90.91 418 35.00 4e-34 mol:protein length:418 tryptophan synthase beta chain
blastp_pdb 1v8z_D 89 431 + 343 Gaps:45 85.05 388 32.73 7e-34 mol:protein length:388 Tryptophan synthase beta chain 1
blastp_pdb 1v8z_C 89 431 + 343 Gaps:45 85.05 388 32.73 7e-34 mol:protein length:388 Tryptophan synthase beta chain 1
blastp_pdb 1v8z_B 89 431 + 343 Gaps:45 85.05 388 32.73 7e-34 mol:protein length:388 Tryptophan synthase beta chain 1
blastp_pdb 1v8z_A 89 431 + 343 Gaps:45 85.05 388 32.73 7e-34 mol:protein length:388 Tryptophan synthase beta chain 1
blastp_pdb 1wdw_L 89 431 + 343 Gaps:45 85.71 385 32.73 8e-34 mol:protein length:385 Tryptophan synthase beta chain 1
blastp_pdb 1wdw_J 89 431 + 343 Gaps:45 85.71 385 32.73 8e-34 mol:protein length:385 Tryptophan synthase beta chain 1
blastp_pdb 1wdw_H 89 431 + 343 Gaps:45 85.71 385 32.73 8e-34 mol:protein length:385 Tryptophan synthase beta chain 1
blastp_pdb 1wdw_F 89 431 + 343 Gaps:45 85.71 385 32.73 8e-34 mol:protein length:385 Tryptophan synthase beta chain 1
blastp_uniprot_sprot sp|O67409|TRPB2_AQUAE 23 444 + 422 Gaps:3 97.93 434 61.65 0.0 Tryptophan synthase beta chain 2 OS Aquifex aeolicus (strain VF5) GN trpB2 PE 3 SV 1
blastp_uniprot_sprot sp|O29028|TRPB2_ARCFU 19 444 + 426 Gaps:2 97.47 435 59.91 0.0 Tryptophan synthase beta chain 2 OS Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN trpB2 PE 3 SV 1
blastp_uniprot_sprot sp|Q8Q001|TRPB2_METMA 19 442 + 424 none 95.93 442 59.67 0.0 Tryptophan synthase beta chain 2 OS Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) GN trpB2 PE 3 SV 1
blastp_uniprot_sprot sp|Q9WZ09|TRPB2_THEMA 18 434 + 417 Gaps:1 98.58 422 60.58 3e-180 Tryptophan synthase beta chain 2 OS Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN trpB2 PE 3 SV 1
blastp_uniprot_sprot sp|Q8TL44|TRPB2_METAC 19 443 + 425 none 96.15 442 58.35 1e-179 Tryptophan synthase beta chain 2 OS Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN trpB2 PE 3 SV 1
blastp_uniprot_sprot sp|Q9Y9H2|TRPB2_AERPE 18 455 + 438 Gaps:5 97.77 449 55.58 2e-170 Tryptophan synthase beta chain 2 OS Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN trpB2 PE 3 SV 1
blastp_uniprot_sprot sp|A8F8F7|TRPB_THELT 17 434 + 418 Gaps:1 98.82 422 57.31 7e-169 Tryptophan synthase beta chain OS Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN trpB PE 3 SV 1
blastp_uniprot_sprot sp|O59265|TRPB_PYRHO 8 444 + 437 Gaps:2 95.21 459 54.23 1e-168 Tryptophan synthase beta chain OS Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN trpB PE 3 SV 1
blastp_uniprot_sprot sp|O27520|TRPB2_METTH 19 442 + 424 Gaps:3 98.60 429 55.56 1e-168 Tryptophan synthase beta chain 2 OS Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN trpB2 PE 3 SV 1
blastp_uniprot_sprot sp|B6YSU5|TRPB_THEON 15 444 + 430 Gaps:2 97.07 443 53.49 3e-166 Tryptophan synthase beta chain OS Thermococcus onnurineus (strain NA1) GN trpB PE 3 SV 1

11 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 87 425 339 PF00291 none Pyridoxal-phosphate dependent enzyme IPR001926
Gene3D 136 202 67 G3DSA:3.40.50.1100 none none none
TIGRFAM 24 440 417 TIGR01415 "KEGG:00260+4.2.1.20","KEGG:00400+4.2.1.20","UniPathway:UPA00035" trpB_rel: pyridoxal-phosphate dependent TrpB-like enzyme IPR006316
PANTHER 18 215 198 PTHR10314:SF21 "KEGG:00260+4.2.1.20","KEGG:00400+4.2.1.20","UniPathway:UPA00035";signature_desc=TRYPTOPHAN SYNTHASE BETA CHAIN none IPR006316
SUPERFAMILY 41 438 398 SSF53686 none none IPR001926
PANTHER 235 462 228 PTHR10314:SF21 "KEGG:00260+4.2.1.20","KEGG:00400+4.2.1.20","UniPathway:UPA00035";signature_desc=TRYPTOPHAN SYNTHASE BETA CHAIN none IPR006316
PANTHER 18 215 198 PTHR10314 none none none
PIRSF 13 447 435 PIRSF500824 "KEGG:00260+4.2.1.20","KEGG:00400+4.2.1.20","UniPathway:UPA00035" none IPR006316
PANTHER 235 462 228 PTHR10314 none none none
Gene3D 220 443 224 G3DSA:3.40.50.1100 none none none
PIRSF 20 444 425 PIRSF001413 "KEGG:00260+4.2.1.20","KEGG:00400+4.2.1.20","UniPathway:UPA00035" none IPR023026

0 Localization

9 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran_2000_2002_QTL2_Delta.F Qrob_Chr02 2 s_1CSO13_1244 s_1AVEUF_1540 55.44 46,71 63,68 lod 7.3232 0.058
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf Qrob_Chr02 2 s_1AEP21_172 v_6048_204 46.33 22,5 65,23 lod 4.972 0.03

0 Targeting