Protein : Qrob_P0459080.2 Q. robur
Protein Identifier  ? Qrob_P0459080.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) PF06206 - CpeT/CpcT family (DUF1001) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 258  
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0017009 protein-phycocyanobilin linkage The linkage of the chromophore phycocyanobilin to phycocyanin or allophycocyanin.

16 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_014774 5 257 + 253 none 94.05 269 89.33 2e-172 JHL07K02.6 protein
blastp_kegg lcl|rcu:RCOM_1503200 5 257 + 253 none 95.47 265 87.75 9e-171 hypothetical protein
blastp_kegg lcl|pvu:PHAVU_009G160500g 1 257 + 257 Gaps:6 100.00 263 82.51 1e-165 hypothetical protein
blastp_kegg lcl|mdm:103448285 7 257 + 251 Gaps:1 92.65 272 87.30 2e-165 uncharacterized LOC103448285
blastp_kegg lcl|pop:POPTR_0012s11160g 6 256 + 251 none 91.94 273 85.66 4e-165 POPTRDRAFT_834377 hypothetical protein
blastp_kegg lcl|fve:101299965 7 257 + 251 none 89.96 279 85.66 6e-165 chromophore lyase CpcT/CpeT 3-like
blastp_kegg lcl|mdm:103454873 7 257 + 251 none 92.62 271 85.26 1e-163 uncharacterized LOC103454873
blastp_kegg lcl|gmx:100800615 5 257 + 253 none 95.11 266 83.79 3e-163 uncharacterized LOC100800615
blastp_kegg lcl|pper:PRUPE_ppa009943mg 7 257 + 251 none 92.62 271 84.46 3e-163 hypothetical protein
blastp_kegg lcl|pxb:103962642 7 257 + 251 none 92.62 271 84.86 3e-163 chromophore lyase CRL chloroplastic-like
blastp_uniprot_sprot sp|B0JGA0|CPXT3_MICAN 27 223 + 197 Gaps:12 92.57 202 33.69 4e-22 Chromophore lyase CpcT/CpeT 3 OS Microcystis aeruginosa (strain NIES-843) GN cpcT3 PE 3 SV 1
blastp_uniprot_sprot sp|Q7NNH3|CPXT1_GLOVI 40 223 + 184 Gaps:20 76.86 229 34.09 8e-17 Chromophore lyase CpcT/CpeT 1 OS Gloeobacter violaceus (strain PCC 7421) GN cpcT1 PE 3 SV 1
blastp_uniprot_sprot sp|Q8YZ40|CPCTL_NOSS1 44 222 + 179 Gaps:36 90.40 198 29.61 8e-08 Phycocyanobilin lyase CpcT homolog OS Nostoc sp. (strain PCC 7120 / UTEX 2576) GN cpcT2 PE 2 SV 1
blastp_uniprot_sprot sp|P74371|CPXT_SYNY3 27 235 + 209 Gaps:28 99.49 196 28.21 8e-07 Chromophore lyase CpcT/CpeT OS Synechocystis sp. (strain PCC 6803 / Kazusa) GN cpcT PE 3 SV 1
blastp_uniprot_sprot sp|Q2JWI9|CPXT1_SYNJA 41 223 + 183 Gaps:13 78.90 218 26.74 4e-06 Chromophore lyase CpcT/CpeT 1 OS Synechococcus sp. (strain JA-3-3Ab) GN cpcT1 PE 3 SV 1
rpsblast_cdd gnl|CDD|191471 38 224 + 187 Gaps:15 100.00 180 35.00 5e-46 pfam06206 CpeT CpeT/CpcT family (DUF1001). This family consists of proteins of proteins belonging to the CpeT/CpcT family. These proteins are around 200 amino acids in length. The proteins contain a conserved motif PYR in the amino terminal half of the protein that may be functionally important. The species distribution of the family is interesting. So far it is restricted to cyanobacteria cryptomonads and plants. It has been shown that CpcT encodes a bilin lyase responsible for attachment of phycocyanobilin to the beta subunit of phycocyanin.

6 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 29 257 229 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 25 28 4 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
Phobius 1 13 13 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
Phobius 14 24 11 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
Pfam 40 223 184 PF06206 none CpeT/CpcT family (DUF1001) IPR010404
Phobius 1 28 28 SIGNAL_PEPTIDE none Signal peptide region none

1 Localization

Analysis Start End Length
SignalP_EUK 1 30 29

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2002_QTL13_peak_Bud_burst_3P Qrob_Chr10 10 s_1B1AG7_637 s_1A3A1N_709 19,44 0 49,44 lod 3 5,6
Bourran2_2002_QTL15_peak_Bud_burst_A4 Qrob_Chr10 10 v_7579_71 s_1ATZMJ_189 23,94 0 43,64 lod 3,7 5,4
Bourran2_2014_vSeqBC_3P Qrob_Chr10 10 s_1A6CK6_610 v_7092_29 4,28 0 23,27 lod 2,8619 7
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
PM_1999_QTL16_peak_Bud_burst_3P Qrob_Chr10 10 s_1B6YNI_505 s_1A1ZO_1322 7,48 0 31,48 lod 4 7,1

0 Targeting