Protein : Qrob_P0458950.2 Q. robur
Protein Identifier  ? Qrob_P0458950.2 Organism . Name  Quercus robur
Score  86.2 Score Type  egn
Protein Description  (M=1) K15979 - staphylococcal nuclease domain-containing protein 1 Code Enzyme  EC:3.1.31.1
Gene Prediction Quality  validated Protein length 

Sequence

Length: 1000  
Kegg Orthology  K15979
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003712 transcription cofactor activity Interacting selectively and non-covalently with a regulatory transcription factor and also with the basal transcription machinery in order to modulate transcription. Cofactors generally do not bind the template nucleic acid, but rather mediate protein-protein interactions between regulatory transcription factors and the basal transcription machinery.
GO:0031047 gene silencing by RNA Any process in which RNA molecules inactivate expression of target genes.
GO:0035194 posttranscriptional gene silencing by RNA Any process of posttranscriptional gene inactivation (silencing) mediated by small RNA molecules that may trigger mRNA degradation or negatively regulate translation.
GO:0016442 RISC complex A ribonucleoprotein complex that contains members of the Argonaute family of proteins, small interfering RNAs (siRNAs) or microRNAs (miRNAs), and miRNA or siRNA-complementary mRNAs, in addition to a number of accessory factors. The RISC complex is involved in posttranscriptional repression of gene expression through downregulation of translation or induction of mRNA degradation.

38 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_014786 1 999 + 999 Gaps:12 100.00 995 83.92 0.0 TUDOR-SN protein 1 isoform 1
blastp_kegg lcl|gmx:100794481 1 999 + 999 Gaps:10 99.90 990 82.51 0.0 staphylococcal nuclease domain-containing protein 1-like
blastp_kegg lcl|gmx:100802766 1 999 + 999 Gaps:10 99.90 990 82.20 0.0 staphylococcal nuclease domain-containing protein 1-like
blastp_kegg lcl|vvi:100244222 2 999 + 998 Gaps:12 98.80 1000 83.20 0.0 staphylococcal nuclease domain-containing protein 1-like
blastp_kegg lcl|cam:101488993 1 999 + 999 Gaps:12 100.00 989 82.91 0.0 staphylococcal nuclease domain-containing protein 1-like
blastp_kegg lcl|cmo:103502266 1 999 + 999 Gaps:15 100.00 988 83.20 0.0 staphylococcal nuclease domain-containing protein 1
blastp_kegg lcl|csv:101205177 1 999 + 999 Gaps:15 100.00 988 83.00 0.0 staphylococcal nuclease domain-containing protein 1-like
blastp_kegg lcl|mtr:MTR_3g098420 1 999 + 999 Gaps:11 99.80 992 82.42 0.0 nuclease domain-containing protein
blastp_kegg lcl|gmx:100782692 1 999 + 999 Gaps:12 100.00 995 81.41 0.0 staphylococcal nuclease domain-containing protein 1-like
blastp_kegg lcl|gmx:100809534 1 999 + 999 Gaps:8 100.00 991 81.84 0.0 staphylococcal nuclease domain-containing protein 1-like
blastp_pdb 3bdl_A 12 870 + 859 Gaps:160 81.58 570 50.97 7e-84 mol:protein length:570 Staphylococcal nuclease domain-containing pro
blastp_pdb 3omg_B 706 987 + 282 Gaps:35 97.70 261 32.94 1e-20 mol:protein length:261 Staphylococcal nuclease domain-containing pro
blastp_pdb 3omg_A 706 987 + 282 Gaps:35 97.70 261 32.94 1e-20 mol:protein length:261 Staphylococcal nuclease domain-containing pro
blastp_pdb 3omc_B 706 987 + 282 Gaps:35 97.70 261 32.94 1e-20 mol:protein length:261 Staphylococcal nuclease domain-containing pro
blastp_pdb 3omc_A 706 987 + 282 Gaps:35 97.70 261 32.94 1e-20 mol:protein length:261 Staphylococcal nuclease domain-containing pro
blastp_pdb 2wac_B 747 980 + 234 Gaps:24 97.25 218 34.91 5e-20 mol:protein length:218 CG7008-PA
blastp_pdb 2wac_A 747 980 + 234 Gaps:24 97.25 218 34.91 5e-20 mol:protein length:218 CG7008-PA
blastp_pdb 2hqx_B 747 987 + 241 Gaps:29 89.43 246 33.18 1e-18 mol:protein length:246 P100 CO-ACTIVATOR TUDOR DOMAIN
blastp_pdb 2hqx_A 747 987 + 241 Gaps:29 89.43 246 33.18 1e-18 mol:protein length:246 P100 CO-ACTIVATOR TUDOR DOMAIN
blastp_pdb 2hqe_B 747 987 + 241 Gaps:29 89.43 246 33.18 1e-18 mol:protein length:246 P100 Co-activator tudor domain
blastp_uniprot_sprot sp|Q66X93|SND1_RAT 12 987 + 976 Gaps:252 97.25 909 45.93 3e-157 Staphylococcal nuclease domain-containing protein 1 OS Rattus norvegicus GN Snd1 PE 2 SV 1
blastp_uniprot_sprot sp|Q78PY7|SND1_MOUSE 12 987 + 976 Gaps:252 97.14 910 46.04 4e-157 Staphylococcal nuclease domain-containing protein 1 OS Mus musculus GN Snd1 PE 1 SV 1
blastp_uniprot_sprot sp|Q863B3|SND1_BOVIN 12 987 + 976 Gaps:246 97.14 910 45.02 7e-157 Staphylococcal nuclease domain-containing protein 1 OS Bos taurus GN SND1 PE 1 SV 1
blastp_uniprot_sprot sp|Q7KZF4|SND1_HUMAN 12 987 + 976 Gaps:250 97.14 910 45.14 4e-156 Staphylococcal nuclease domain-containing protein 1 OS Homo sapiens GN SND1 PE 1 SV 1
blastp_uniprot_sprot sp|Q5REU4|SND1_PONAB 12 987 + 976 Gaps:250 97.14 910 45.25 5e-156 Staphylococcal nuclease domain-containing protein 1 OS Pongo abelii GN SND1 PE 2 SV 1
blastp_uniprot_sprot sp|Q7ZT42|SND1_DANRE 3 977 + 975 Gaps:174 98.89 897 39.80 1e-150 Staphylococcal nuclease domain-containing protein 1 OS Danio rerio GN snd1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9Y7U7|SND1_SCHPO 9 980 + 972 Gaps:155 99.20 878 32.26 1e-98 Staphylococcal nuclease domain-containing protein 1 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN snd1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9BXT4|TDRD1_HUMAN 615 872 + 258 Gaps:108 59.83 1180 30.74 3e-11 Tudor domain-containing protein 1 OS Homo sapiens GN TDRD1 PE 2 SV 2
blastp_uniprot_sprot sp|Q99MV1|TDRD1_MOUSE 749 865 + 117 Gaps:7 9.73 1172 33.33 5e-09 Tudor domain-containing protein 1 OS Mus musculus GN Tdrd1 PE 1 SV 2
blastp_uniprot_sprot sp|O60522|TDRD6_HUMAN 747 870 + 124 Gaps:10 5.63 2096 33.90 4e-08 Tudor domain-containing protein 6 OS Homo sapiens GN TDRD6 PE 2 SV 2

39 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 11 226 216 PTHR12302 none none none
PANTHER 264 491 228 PTHR12302 none none none
ProSiteProfiles 743 978 236 PS50830 none Thermonuclease domain profile. IPR016071
Pfam 745 865 121 PF00567 none Tudor domain IPR002999
Gene3D 583 717 135 G3DSA:2.40.50.90 none none IPR016071
Gene3D 10 151 142 G3DSA:2.40.50.90 none none IPR016071
Coils 342 363 22 Coil none none none
SUPERFAMILY 377 458 82 SSF50199 none none IPR016071
SUPERFAMILY 509 563 55 SSF50199 none none IPR016071
SUPERFAMILY 783 866 84 SSF63748 none none none
PANTHER 513 996 484 PTHR12302 none none none
ProSiteProfiles 589 716 128 PS50830 none Thermonuclease domain profile. IPR016071
ProSiteProfiles 380 559 180 PS50830 none Thermonuclease domain profile. IPR016071
Pfam 44 151 108 PF00565 none Staphylococcal nuclease homologue IPR016071
Pfam 619 716 98 PF00565 none Staphylococcal nuclease homologue IPR016071
Pfam 273 365 93 PF00565 none Staphylococcal nuclease homologue IPR016071
Pfam 872 977 106 PF00565 none Staphylococcal nuclease homologue IPR016071
SUPERFAMILY 583 717 135 SSF50199 none none IPR016071
ProSiteProfiles 186 366 181 PS50830 none Thermonuclease domain profile. IPR016071
SUPERFAMILY 829 984 156 SSF50199 none none IPR016071
ProSiteProfiles 10 151 142 PS50830 none Thermonuclease domain profile. IPR016071
SMART 789 853 65 SM00333 none Tudor domain IPR002999
SUPERFAMILY 182 232 51 SSF50199 none none IPR016071
SUPERFAMILY 275 370 96 SSF50199 none none IPR016071
Gene3D 767 845 79 G3DSA:2.30.30.140 none none none
PANTHER 11 226 216 PTHR12302:SF2 none none IPR030481
PANTHER 264 491 228 PTHR12302:SF2 none none IPR030481
PANTHER 513 996 484 PTHR12302:SF2 none none IPR030481
PIRSF 1 990 990 PIRSF017179 none none IPR016685
Gene3D 195 223 29 G3DSA:2.40.50.90 none none IPR016071

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2002_QTL13_peak_Bud_burst_3P Qrob_Chr10 10 s_1B1AG7_637 s_1A3A1N_709 19,44 0 49,44 lod 3 5,6
Bourran2_2002_QTL15_peak_Bud_burst_A4 Qrob_Chr10 10 v_7579_71 s_1ATZMJ_189 23,94 0 43,64 lod 3,7 5,4
Bourran2_2014_vSeqBC_3P Qrob_Chr10 10 s_1A6CK6_610 v_7092_29 4,28 0 23,27 lod 2,8619 7
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
PM_1999_QTL16_peak_Bud_burst_3P Qrob_Chr10 10 s_1B6YNI_505 s_1A1ZO_1322 7,48 0 31,48 lod 4 7,1

0 Targeting