Protein : Qrob_P0458910.2 Q. robur
Protein Identifier  ? Qrob_P0458910.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) PTHR31238:SF3 - GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 4 (PTHR31238:SF3) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 225  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0045735 nutrient reservoir activity Functions in the storage of nutritious substrates.
GO:0030145 manganese ion binding Interacting selectively and non-covalently with manganese (Mn) ions.

27 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100248580 1 221 + 221 Gaps:6 98.21 223 67.12 9e-93 germin-like protein 11-1
blastp_kegg lcl|tcc:TCM_014789 3 222 + 220 Gaps:2 81.95 266 63.30 5e-92 RmlC-like cupins superfamily protein putative
blastp_kegg lcl|pop:POPTR_0015s12110g 3 204 + 202 Gaps:2 92.59 216 68.50 8e-89 POPTRDRAFT_253095 germin-like protein subfamily 3 member 4 precursor
blastp_kegg lcl|rcu:RCOM_1503010 3 221 + 219 Gaps:2 99.54 218 60.37 5e-86 Rhicadhesin receptor precursor putative (EC:1.15.1.1)
blastp_kegg lcl|pop:POPTR_0012s11330g 6 221 + 216 Gaps:3 98.19 221 60.37 2e-84 POPTRDRAFT_1095687 hypothetical protein
blastp_kegg lcl|mdm:103454866 5 218 + 214 Gaps:8 91.56 225 64.08 3e-84 germin-like protein subfamily 3 member 4
blastp_kegg lcl|pxb:103962655 5 218 + 214 Gaps:8 91.56 225 64.08 4e-83 germin-like protein subfamily 3 member 4
blastp_kegg lcl|fve:101309989 5 222 + 218 Gaps:8 95.45 220 64.29 5e-83 germin-like protein subfamily 3 member 4-like
blastp_kegg lcl|cic:CICLE_v10032668mg 3 221 + 219 Gaps:3 95.15 227 60.65 1e-82 hypothetical protein
blastp_kegg lcl|cit:102615627 3 221 + 219 Gaps:3 95.15 227 60.19 5e-82 germin-like protein subfamily 3 member 4-like
blastp_pdb 2et7_A 22 212 + 191 Gaps:12 99.00 201 41.21 4e-33 mol:protein length:201 Oxalate oxidase 1
blastp_pdb 2ete_B 22 212 + 191 Gaps:12 99.00 201 40.70 3e-32 mol:protein length:201 Oxalate oxidase 1
blastp_pdb 2ete_A 22 212 + 191 Gaps:12 99.00 201 40.70 3e-32 mol:protein length:201 Oxalate oxidase 1
blastp_pdb 2et1_A 23 212 + 190 Gaps:12 98.51 201 40.91 5e-32 mol:protein length:201 Oxalate oxidase 1
blastp_pdb 1fi2_A 23 212 + 190 Gaps:12 98.51 201 40.91 5e-32 mol:protein length:201 OXALATE OXIDASE
blastp_uniprot_sprot sp|Q2R352|GL111_ORYSJ 21 205 + 185 Gaps:1 82.88 222 60.33 2e-73 Germin-like protein 11-1 OS Oryza sativa subsp. japonica GN Os11g0537300 PE 2 SV 1
blastp_uniprot_sprot sp|Q9FLT3|GL34_ARATH 10 210 + 201 Gaps:3 95.24 210 56.50 2e-73 Germin-like protein subfamily 3 member 4 OS Arabidopsis thaliana GN At5g61750 PE 2 SV 1
blastp_uniprot_sprot sp|P45852|GLP1_MESCR 1 205 + 205 Gaps:6 90.56 233 42.18 4e-45 Germin-like protein OS Mesembryanthemum crystallinum PE 2 SV 1
blastp_uniprot_sprot sp|Q6K5Q0|GL21_ORYSJ 1 197 + 197 Gaps:7 92.59 216 42.50 8e-41 Putative germin-like protein 2-1 OS Oryza sativa subsp. japonica GN Os02g0491600 PE 3 SV 1
blastp_uniprot_sprot sp|Q942A8|GL13_ORYSJ 1 200 + 200 Gaps:2 90.58 223 41.58 8e-41 Germin-like protein 1-3 OS Oryza sativa subsp. japonica GN GER8 PE 2 SV 1
blastp_uniprot_sprot sp|Q6K5P8|GL23_ORYSJ 19 197 + 179 Gaps:7 81.61 223 43.96 1e-40 Putative germin-like protein 2-3 OS Oryza sativa subsp. japonica GN Os02g0491800 PE 3 SV 1
blastp_uniprot_sprot sp|P94072|GL33_ARATH 8 213 + 206 Gaps:2 96.68 211 39.71 1e-40 Germin-like protein subfamily 3 member 3 OS Arabidopsis thaliana GN GER3 PE 1 SV 1
blastp_uniprot_sprot sp|P94014|GL21_ARATH 22 195 + 174 Gaps:5 79.91 219 45.71 2e-40 Germin-like protein subfamily 2 member 1 OS Arabidopsis thaliana GN GLP4 PE 2 SV 2
blastp_uniprot_sprot sp|Q94EG3|NEC1_NICLS 6 195 + 190 Gaps:8 82.97 229 43.68 1e-39 Nectarin-1 OS Nicotiana langsdorffii x Nicotiana sanderae GN NECI PE 1 SV 1
blastp_uniprot_sprot sp|Q9S8P4|RHRE_PEA 20 197 + 178 Gaps:16 77.42 217 45.83 2e-39 Rhicadhesin receptor OS Pisum sativum GN GER1 PE 1 SV 2
rpsblast_cdd gnl|CDD|197904 71 206 + 136 Gaps:10 91.78 146 35.07 3e-24 smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
rpsblast_cdd gnl|CDD|201069 68 180 + 113 Gaps:4 82.73 139 35.65 4e-19 pfam00190 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.

15 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PRINTS 110 130 21 PR00325 none Germin signature IPR001929
PRINTS 173 188 16 PR00325 none Germin signature IPR001929
PRINTS 140 160 21 PR00325 none Germin signature IPR001929
Phobius 1 3 3 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
Gene3D 24 188 165 G3DSA:2.60.120.10 none none IPR014710
Phobius 23 224 202 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
ProSitePatterns 105 118 14 PS00725 none Germin family signature. IPR019780
Pfam 75 195 121 PF00190 none Cupin IPR006045
Phobius 16 22 7 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
SMART 62 219 158 SM00835 none Cupin IPR006045
PANTHER 1 224 224 PTHR31238:SF3 none none none
SUPERFAMILY 72 188 117 SSF51182 none none IPR011051
PANTHER 1 224 224 PTHR31238 none none none
Phobius 4 15 12 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
Phobius 1 22 22 SIGNAL_PEPTIDE none Signal peptide region none

3 Localization

Analysis Start End Length
SignalP_GRAM_NEGATIVE 1 22 21
SignalP_GRAM_POSITIVE 1 21 20
SignalP_EUK 1 22 21

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2002_QTL13_peak_Bud_burst_3P Qrob_Chr10 10 s_1B1AG7_637 s_1A3A1N_709 19,44 0 49,44 lod 3 5,6
Bourran2_2002_QTL15_peak_Bud_burst_A4 Qrob_Chr10 10 v_7579_71 s_1ATZMJ_189 23,94 0 43,64 lod 3,7 5,4
Bourran2_2014_vSeqBC_3P Qrob_Chr10 10 s_1A6CK6_610 v_7092_29 4,28 0 23,27 lod 2,8619 7
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
PM_1999_QTL16_peak_Bud_burst_3P Qrob_Chr10 10 s_1B6YNI_505 s_1A1ZO_1322 7,48 0 31,48 lod 4 7,1

0 Targeting