Protein : Qrob_P0457140.2 Q. robur
Protein Identifier  ? Qrob_P0457140.2 Organism . Name  Quercus robur
Score  83.1 Score Type  egn
Protein Description  (M=1) PTHR21641 - TRANSLATION INITIATION FACTOR-RELATED Gene Prediction Quality  validated
Protein length 

Sequence

Length: 190  
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0003723 RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO:0003743 translation initiation factor activity Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide.
GO:0006413 translational initiation The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA, and an initiation complex that contains the first aminoacyl-tRNA.

16 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cit:102630681 2 79 + 78 Gaps:10 39.53 172 85.29 2e-27 probable RNA-binding protein EIF1AD-like
blastp_kegg lcl|pmum:103333148 2 93 + 92 Gaps:11 48.54 171 74.70 2e-26 probable RNA-binding protein EIF1AD
blastp_kegg lcl|cic:CICLE_v10032334mg 2 67 + 66 Gaps:3 22.34 282 87.30 4e-26 hypothetical protein
blastp_kegg lcl|pper:PRUPE_ppa012453mg 2 93 + 92 Gaps:11 49.11 169 73.49 9e-26 hypothetical protein
blastp_kegg lcl|cam:101491944 2 93 + 92 Gaps:11 46.11 180 73.49 2e-25 probable RNA-binding protein EIF1AD-like
blastp_kegg lcl|cam:101504078 2 93 + 92 Gaps:11 47.43 175 72.29 2e-25 probable RNA-binding protein EIF1AD-like
blastp_kegg lcl|pop:POPTR_0019s08940g 2 93 + 92 Gaps:9 48.85 174 70.59 4e-25 hypothetical protein
blastp_kegg lcl|vvi:100248727 2 67 + 66 Gaps:3 32.81 192 80.95 7e-25 probable RNA-binding protein EIF1AD-like
blastp_kegg lcl|mdm:103423519 2 67 + 66 Gaps:3 37.28 169 80.95 1e-23 probable RNA-binding protein EIF1AD
blastp_kegg lcl|csv:101212727 2 93 + 92 Gaps:13 49.11 169 71.08 1e-23 probable RNA-binding protein EIF1AD-like
blastp_uniprot_sprot sp|Q7SY07|EIF1A_DANRE 15 110 + 96 Gaps:15 47.09 172 39.51 2e-06 Probable RNA-binding protein EIF1AD OS Danio rerio GN eif1ad PE 2 SV 1
blastp_uniprot_sprot sp|Q3EBI7|FB130_ARATH 2 63 + 62 Gaps:6 12.47 449 50.00 1e-05 F-box protein At2g40910 OS Arabidopsis thaliana GN At2g40910 PE 2 SV 1
rpsblast_cdd gnl|CDD|128900 25 67 + 43 none 51.81 83 48.84 1e-11 smart00652 eIF1a eukaryotic translation initiation factor 1A.
rpsblast_cdd gnl|CDD|189871 25 67 + 43 none 66.15 65 37.21 4e-09 pfam01176 eIF-1a Translation initiation factor 1A / IF-1. This family includes both the eukaryotic translation factor eIF-1A and the bacterial translation initiation factor IF-1.
rpsblast_cdd gnl|CDD|88467 27 67 + 41 none 52.56 78 43.90 1e-07 cd05792 S1_eIF1AD_like S1_eIF1AD_like: eukaryotic translation initiation factor 1A domain containing protein (eIF1AD)-like S1-like RNA-binding domain. eIF1AD is also known as MGC11102 protein. Little is known about the function of eIF1AD. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins including translation initiation factor IF1A (also referred to as eIF1A in eukaryotes). eIF1A is essential for translation initiation. eIF1A acts synergistically with eIF1 to mediate assembly of ribosomal initiation complexes at the initiation codon and maintain the accuracy of this process by recognizing and destabilizing aberrant preinitiation complexes from the mRNA. Without eIF1A and eIF1 43S ribosomal preinitiation complexes can bind to the cap-proximal region but are unable to reach the initiation codon. eIF1a also enhances the formation of 5'-terminal complexes in the presence of other translation initiation factors..
rpsblast_kog gnl|CDD|38136 2 69 + 68 Gaps:3 38.92 167 50.77 6e-15 KOG2925 KOG2925 KOG2925 Predicted translation initiation factor related to eIF-1A [Translation ribosomal structure and biogenesis].

5 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SMART 22 89 68 SM00652 none eukaryotic translation initiation factor 1A IPR001253
PANTHER 2 67 66 PTHR21641 none none none
Pfam 25 67 43 PF01176 none Translation initiation factor 1A / IF-1 IPR006196
Gene3D 2 67 66 G3DSA:2.40.50.140 none none IPR012340
SUPERFAMILY 23 67 45 SSF50249 none none IPR012340

0 Localization

0 Qtllist

0 Targeting