Protein : Qrob_P0455610.2 Q. robur
Protein Identifier  ? Qrob_P0455610.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=1) KOG2023//KOG2171//KOG2274 - Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure Intracellular trafficking secretion and vesicular transport]. // Karyopherin (importin) beta 3 [Nuclear structure Intracellular trafficking secretion and vesicular transport]. // Predicted importin 9 [Intracellular trafficking secretion and vesicular transport Nuclear structure]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 164  
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0005488 binding The selective, non-covalent, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule.
GO:0006886 intracellular protein transport The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
GO:0008536 Ran GTPase binding Interacting selectively and non-covalently with Ran, a conserved Ras-like GTP-binding protein, implicated in nucleocytoplasmic transport, cell cycle progression, spindle assembly, nuclear organization and nuclear envelope (NE) assembly.

33 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa001178mg 7 159 + 153 Gaps:3 17.59 887 90.38 2e-88 hypothetical protein
blastp_kegg lcl|mdm:103444984 7 159 + 153 Gaps:3 33.12 471 83.33 3e-88 transportin-1-like
blastp_kegg lcl|pmum:103334861 7 159 + 153 Gaps:3 17.47 893 89.74 6e-88 transportin-1
blastp_kegg lcl|csv:101222100 7 159 + 153 Gaps:2 17.40 891 87.74 7e-87 transportin-1-like
blastp_kegg lcl|pop:POPTR_0004s18420g 6 159 + 154 Gaps:2 17.57 888 84.62 8e-87 POPTRDRAFT_818217 importin beta-2 subunit family protein
blastp_kegg lcl|cit:102618840 4 159 + 156 Gaps:2 17.73 891 85.44 5e-86 transportin-1-like
blastp_kegg lcl|cic:CICLE_v10027778mg 4 159 + 156 Gaps:2 17.52 902 85.44 6e-86 hypothetical protein
blastp_kegg lcl|rcu:RCOM_0977270 3 159 + 157 Gaps:2 19.30 824 83.65 1e-85 importin beta-2 putative
blastp_kegg lcl|pop:POPTR_0009s14030g 7 159 + 153 Gaps:2 17.49 886 84.52 4e-85 POPTRDRAFT_804102 hypothetical protein
blastp_kegg lcl|pxb:103932585 7 159 + 153 Gaps:3 17.37 898 82.69 3e-83 transportin-1-like
blastp_pdb 2ot8_B 25 159 + 135 none 15.85 852 36.30 2e-23 mol:protein length:852 Transportin-1
blastp_pdb 2ot8_A 25 159 + 135 none 15.85 852 36.30 2e-23 mol:protein length:852 Transportin-1
blastp_pdb 2h4m_B 25 159 + 135 none 15.61 865 36.30 2e-23 mol:protein length:865 Transportin-1
blastp_pdb 2h4m_A 25 159 + 135 none 15.61 865 36.30 2e-23 mol:protein length:865 Transportin-1
blastp_pdb 2z5o_A 25 159 + 135 none 15.17 890 36.30 3e-23 mol:protein length:890 Transportin-1
blastp_pdb 2z5n_A 25 159 + 135 none 15.17 890 36.30 3e-23 mol:protein length:890 Transportin-1
blastp_pdb 2z5m_A 25 159 + 135 none 15.17 890 36.30 3e-23 mol:protein length:890 Transportin-1
blastp_pdb 2z5k_A 25 159 + 135 none 15.17 890 36.30 3e-23 mol:protein length:890 Transportin-1
blastp_pdb 2z5j_A 25 159 + 135 none 15.17 890 36.30 3e-23 mol:protein length:890 Transportin-1
blastp_pdb 2qmr_D 25 159 + 135 none 15.17 890 36.30 3e-23 mol:protein length:890 Transportin-1
blastp_uniprot_sprot sp|Q8H0U4|TNPO1_ARATH 10 159 + 150 Gaps:2 17.06 891 78.29 2e-75 Transportin-1 OS Arabidopsis thaliana GN TRN1 PE 1 SV 1
blastp_uniprot_sprot sp|B9FDR3|TNPO1_ORYSJ 1 159 + 159 Gaps:2 17.62 891 69.43 2e-69 Transportin-1 OS Oryza sativa subsp. japonica GN TRN1 PE 3 SV 2
blastp_uniprot_sprot sp|B8ARW2|TNPO1_ORYSI 7 159 + 153 none 17.19 890 69.28 3e-69 Transportin-1 OS Oryza sativa subsp. indica GN OsI_18044 PE 2 SV 1
blastp_uniprot_sprot sp|O14787|TNPO2_HUMAN 9 159 + 151 Gaps:1 16.95 897 39.47 5e-26 Transportin-2 OS Homo sapiens GN TNPO2 PE 1 SV 3
blastp_uniprot_sprot sp|Q99LG2|TNPO2_MOUSE 9 159 + 151 Gaps:1 17.14 887 39.47 6e-26 Transportin-2 OS Mus musculus GN Tnpo2 PE 2 SV 1
blastp_uniprot_sprot sp|Q55CQ7|TNPO_DICDI 8 157 + 150 Gaps:2 16.11 931 37.33 6e-23 Transportin OS Dictyostelium discoideum GN tnpo PE 3 SV 1
blastp_uniprot_sprot sp|Q8BFY9|TNPO1_MOUSE 25 159 + 135 none 15.03 898 36.30 1e-22 Transportin-1 OS Mus musculus GN Tnpo1 PE 1 SV 2
blastp_uniprot_sprot sp|Q3SYU7|TNPO1_BOVIN 25 159 + 135 none 15.03 898 36.30 1e-22 Transportin-1 OS Bos taurus GN TNPO1 PE 1 SV 2
blastp_uniprot_sprot sp|Q92973|TNPO1_HUMAN 25 159 + 135 none 15.03 898 36.30 1e-22 Transportin-1 OS Homo sapiens GN TNPO1 PE 1 SV 2
blastp_uniprot_sprot sp|O14089|IMB2_SCHPO 10 159 + 150 Gaps:3 16.81 910 34.64 1e-16 Importin subunit beta-2 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN kap104 PE 3 SV 1

7 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 13 159 147 PTHR10527:SF3 none none none
Gene3D 8 159 152 G3DSA:1.25.10.10 none none IPR011989
SUPERFAMILY 10 160 151 SSF48371 none none IPR016024
ProSiteProfiles 37 105 69 PS50166 none Importin-beta N-terminal domain profile. IPR001494
SMART 37 105 69 SM00913 none Importin-beta N-terminal domain IPR001494
Pfam 40 104 65 PF03810 none Importin-beta N-terminal domain IPR001494
PANTHER 13 159 147 PTHR10527 none none none

0 Localization

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL1_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AMVCC_444 s_1BE1VC_321 4 0 31 lod 3,2 7,4
Bourran2_2003_QTL8_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AH7I_610 s_1BE1VC_321 4,6 0 28 lod 3,5 7,4
Bourran2_2007_QTL6_peak_Bud_burst_3P Qrob_Chr01 1 s_1BE1VC_321 s_1A5JRZ_890 5 0 25 lod 2,4 6
Bourran2_2014_nEpiBC_3P Qrob_Chr01 1 v_1588_550 s_1AZJRA_1600 30,48 9,48 43,98 lod 2,3642 6,3
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6

0 Targeting