Protein : Qrob_P0455110.2 Q. robur
Protein Identifier  ? Qrob_P0455110.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) 5.4.99.29 - 23S rRNA pseudouridine(746) synthase. Code Enzyme  EC:5.4.99.29, EC:5.4.99.28
Gene Prediction Quality  validated Protein length 

Sequence

Length: 170  
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003723 RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO:0001522 pseudouridine synthesis The intramolecular conversion of uridine to pseudouridine within an RNA molecule. This posttranscriptional base modification occurs in tRNA, rRNA, and snRNAs.
GO:0009451 RNA modification The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically.
GO:0009982 pseudouridine synthase activity Catalysis of the reaction: RNA uridine = RNA pseudouridine. Conversion of uridine in an RNA molecule to pseudouridine by rotation of the C1'-N-1 glycosidic bond of uridine in RNA to a C1'-C5.

39 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103332388 1 162 + 162 Gaps:33 48.60 393 73.82 3e-83 RNA pseudouridine synthase 5
blastp_kegg lcl|pxb:103926633 1 162 + 162 Gaps:33 49.10 389 71.20 2e-80 RNA pseudouridine synthase 5
blastp_kegg lcl|vvi:100265032 12 167 + 156 Gaps:31 53.74 348 67.91 1e-79 RNA pseudourine synthase 5-like
blastp_kegg lcl|pvu:PHAVU_007G093000g 13 166 + 154 Gaps:25 49.04 365 67.60 6e-78 hypothetical protein
blastp_kegg lcl|mdm:103444808 1 162 + 162 Gaps:33 49.48 386 69.11 2e-77 RNA pseudouridine synthase 5
blastp_kegg lcl|fve:101302785 13 162 + 150 Gaps:31 48.27 375 71.27 3e-76 RNA pseudourine synthase 5-like
blastp_kegg lcl|mtr:MTR_136s0030 13 165 + 153 Gaps:31 49.60 371 64.67 1e-74 RNA pseudourine synthase
blastp_kegg lcl|mtr:MTR_1g095580 13 165 + 153 Gaps:31 49.60 371 64.67 1e-74 RNA pseudourine synthase
blastp_kegg lcl|tcc:TCM_046955 1 165 + 165 Gaps:34 51.06 378 66.84 6e-74 Pseudouridine synthase family protein
blastp_kegg lcl|gmx:100810058 13 166 + 154 Gaps:31 49.87 371 61.62 8e-74 RNA pseudouridine synthase 5-like
blastp_pdb 2i82_D 72 155 + 84 Gaps:7 36.41 217 40.51 1e-08 mol:protein length:217 Ribosomal large subunit pseudouridine synthas
blastp_pdb 2i82_C 72 155 + 84 Gaps:7 36.41 217 40.51 1e-08 mol:protein length:217 Ribosomal large subunit pseudouridine synthas
blastp_pdb 2i82_B 72 155 + 84 Gaps:7 36.41 217 40.51 1e-08 mol:protein length:217 Ribosomal large subunit pseudouridine synthas
blastp_pdb 2i82_A 72 155 + 84 Gaps:7 36.41 217 40.51 1e-08 mol:protein length:217 Ribosomal large subunit pseudouridine synthas
blastp_pdb 1prz_A 78 152 + 75 Gaps:1 30.16 252 40.79 2e-08 mol:protein length:252 Ribosomal large subunit pseudouridine synthas
blastp_pdb 2ist_A 78 152 + 75 Gaps:1 23.38 325 40.79 5e-08 mol:protein length:325 Ribosomal large subunit pseudouridine synthas
blastp_pdb 1v9f_A 78 152 + 75 Gaps:1 23.38 325 40.79 5e-08 mol:protein length:325 Ribosomal large subunit pseudouridine synthas
blastp_pdb 1qyu_A 78 152 + 75 Gaps:1 21.78 349 40.79 5e-08 mol:protein length:349 Ribosomal large subunit pseudouridine synthas
blastp_uniprot_sprot sp|Q5M721|PUS5_ARATH 10 162 + 153 Gaps:33 50.41 369 61.83 3e-67 RNA pseudouridine synthase 5 OS Arabidopsis thaliana GN At3g52260 PE 2 SV 2
blastp_uniprot_sprot sp|Q0DST9|PUS5_ORYSJ 4 160 + 157 Gaps:39 49.37 397 55.61 8e-58 RNA pseudouridine synthase 5 OS Oryza sativa subsp. japonica GN Os03g0288500 PE 2 SV 2
blastp_uniprot_sprot sp|P72970|Y1592_SYNY3 52 155 + 104 Gaps:4 34.36 291 49.00 4e-19 Uncharacterized RNA pseudouridine synthase slr1592 OS Synechocystis sp. (strain PCC 6803 / Kazusa) GN slr1592 PE 3 SV 1
blastp_uniprot_sprot sp|Q9KU20|RLUD_VIBCH 69 152 + 84 Gaps:3 25.62 324 42.17 1e-09 Ribosomal large subunit pseudouridine synthase D OS Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN rluD PE 3 SV 1
blastp_uniprot_sprot sp|Q8DEV0|RLUD_VIBVU 69 152 + 84 Gaps:3 25.54 325 39.76 7e-09 Ribosomal large subunit pseudouridine synthase D OS Vibrio vulnificus (strain CMCP6) GN rluD PE 3 SV 1
blastp_uniprot_sprot sp|Q87S65|RLUD_VIBPA 69 152 + 84 Gaps:3 25.54 325 40.96 2e-08 Ribosomal large subunit pseudouridine synthase D OS Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN rluD PE 3 SV 1
blastp_uniprot_sprot sp|Q8ZBV7|RLUD_YERPE 78 152 + 75 Gaps:1 23.38 325 40.79 3e-08 Ribosomal large subunit pseudouridine synthase D OS Yersinia pestis GN rluD PE 3 SV 1
blastp_uniprot_sprot sp|Q8FL93|RLUA_ECOL6 69 155 + 87 Gaps:7 37.44 219 40.24 4e-08 Ribosomal large subunit pseudouridine synthase A OS Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN rluA PE 3 SV 3
blastp_uniprot_sprot sp|P0AA38|RLUA_SHIFL 69 155 + 87 Gaps:7 37.44 219 39.02 6e-08 Ribosomal large subunit pseudouridine synthase A OS Shigella flexneri GN rluA PE 3 SV 2
blastp_uniprot_sprot sp|P0AA37|RLUA_ECOLI 69 155 + 87 Gaps:7 37.44 219 39.02 6e-08 Ribosomal large subunit pseudouridine synthase A OS Escherichia coli (strain K12) GN rluA PE 1 SV 2
rpsblast_cdd gnl|CDD|30910 48 159 + 112 Gaps:8 39.45 289 33.33 4e-19 COG0564 RluA Pseudouridylate synthases 23S RNA-specific [Translation ribosomal structure and biogenesis].
rpsblast_cdd gnl|CDD|161659 78 159 + 82 Gaps:1 27.76 299 44.58 3e-17 TIGR00005 rluA_subfam pseudouridine synthase RluA family. In E. coli RluD (SfhB) modifies uridine to pseudouridine at 23S RNA U1911 1915 and 1917 RluC modifies 955 2504 and 2580 and RluA modifies U746 and tRNA U32. An additional homolog from E. coli outside this family TruC modifies uracil-65 in transfer RNAs to pseudouridine.

5 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 58 158 101 PTHR10436:SF93 none none IPR028766
Pfam 87 157 71 PF00849 none RNA pseudouridylate synthase IPR006145
SUPERFAMILY 78 158 81 SSF55120 none none IPR020103
PANTHER 58 158 101 PTHR10436 none none none
ProSitePatterns 128 142 15 PS01129 none Rlu family of pseudouridine synthase signature. IPR006224

0 Localization

7 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04

0 Targeting