Protein : Qrob_P0455070.2 Q. robur
Protein Identifier  ? Qrob_P0455070.2 Organism . Name  Quercus robur
Score  49.2 Score Type  egn
Protein Description  (M=2) PTHR10782:SF34 - E3 SUMO-PROTEIN LIGASE SIZ1 (PTHR10782:SF34) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 631  
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0 Synonyms

6 GO Terms

Identifier Name Description
GO:0008270 zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0016049 cell growth The process in which a cell irreversibly increases in size over time by accretion and biosynthetic production of matter similar to that already present.
GO:0019789 SUMO transferase activity Catalysis of the transfer of SUMO from one protein to another via the reaction X-SUMO + Y --> Y-SUMO + X, where both X-SUMO and Y-SUMO are covalent linkages.
GO:0016925 protein sumoylation The process in which a SUMO protein (small ubiquitin-related modifier) is conjugated to a target protein via an isopeptide bond between the carboxyl terminus of SUMO with an epsilon-amino group of a lysine residue of the target protein.
GO:0031668 cellular response to extracellular stimulus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an extracellular stimulus.

23 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa026063mg 13 605 + 593 Gaps:60 70.41 845 61.18 0.0 hypothetical protein
blastp_kegg lcl|pmum:103332393 13 605 + 593 Gaps:61 69.72 852 60.10 0.0 E3 SUMO-protein ligase SIZ1-like
blastp_kegg lcl|pop:POPTR_0008s04190g 13 604 + 592 Gaps:56 71.12 869 55.99 0.0 POPTRDRAFT_563767 hypothetical protein
blastp_kegg lcl|pop:POPTR_0010s22630g 14 604 + 591 Gaps:48 70.98 858 54.35 0.0 POPTRDRAFT_227872 hypothetical protein
blastp_kegg lcl|fve:101303939 13 605 + 593 Gaps:51 68.28 829 58.30 0.0 E3 SUMO-protein ligase SIZ1-like
blastp_kegg lcl|tcc:TCM_043097 13 604 + 592 Gaps:60 69.57 851 55.74 0.0 DNA-binding protein with MIZ/SP-RING zinc finger putative isoform 1
blastp_kegg lcl|vvi:100258698 13 605 + 593 Gaps:60 70.89 876 52.33 0.0 E3 SUMO-protein ligase SIZ1-like
blastp_kegg lcl|cit:102614878 13 605 + 593 Gaps:64 70.80 880 52.01 0.0 E3 SUMO-protein ligase SIZ1-like
blastp_kegg lcl|mdm:103447861 13 605 + 593 Gaps:64 70.81 877 52.01 0.0 E3 SUMO-protein ligase SIZ1
blastp_kegg lcl|pmum:103324907 13 605 + 593 Gaps:63 70.84 878 50.80 0.0 E3 SUMO-protein ligase SIZ1
blastp_pdb 3i2d_A 108 208 + 101 Gaps:3 26.42 371 30.61 7e-12 mol:protein length:371 E3 SUMO-protein ligase SIZ1
blastp_uniprot_sprot sp|Q680Q4|SIZ1_ARATH 13 598 + 586 Gaps:76 69.00 884 47.21 3e-149 E3 SUMO-protein ligase SIZ1 OS Arabidopsis thaliana GN SIZ1 PE 1 SV 2
blastp_uniprot_sprot sp|Q6L4L4|SIZ1_ORYSJ 13 605 + 593 Gaps:47 70.63 875 44.17 4e-146 E3 SUMO-protein ligase SIZ1 OS Oryza sativa subsp. japonica GN SIZ1 PE 1 SV 1
blastp_uniprot_sprot sp|Q6ASW7|SIZ2_ORYSJ 11 366 + 356 Gaps:38 42.56 813 54.05 6e-104 E3 SUMO-protein ligase SIZ2 OS Oryza sativa subsp. japonica GN SIZ2 PE 2 SV 1
blastp_uniprot_sprot sp|O94451|PLI1_SCHPO 17 213 + 197 Gaps:23 24.76 727 28.89 5e-16 E3 SUMO-protein ligase pli1 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN pli1 PE 1 SV 3
blastp_uniprot_sprot sp|Q8CIE2|ZMIZ2_MOUSE 59 227 + 169 Gaps:17 17.83 920 32.32 1e-15 Zinc finger MIZ domain-containing protein 2 OS Mus musculus GN Zmiz2 PE 2 SV 2
blastp_uniprot_sprot sp|Q8NF64|ZMIZ2_HUMAN 59 206 + 148 Gaps:15 15.76 920 32.41 2e-15 Zinc finger MIZ domain-containing protein 2 OS Homo sapiens GN ZMIZ2 PE 1 SV 2
blastp_uniprot_sprot sp|O88907|PIAS1_MOUSE 107 227 + 121 Gaps:6 18.28 651 34.45 2e-14 E3 SUMO-protein ligase PIAS1 OS Mus musculus GN Pias1 PE 1 SV 2
blastp_uniprot_sprot sp|O75925|PIAS1_HUMAN 107 251 + 145 Gaps:7 22.12 651 31.25 3e-14 E3 SUMO-protein ligase PIAS1 OS Homo sapiens GN PIAS1 PE 1 SV 2
blastp_uniprot_sprot sp|Q12216|SIZ2_YEAST 92 206 + 115 Gaps:4 15.29 726 31.53 5e-14 E3 SUMO-protein ligase SIZ2 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN NFI1 PE 1 SV 1
blastp_uniprot_sprot sp|Q6AZ28|PIAS2_RAT 107 206 + 100 Gaps:4 16.78 572 36.46 8e-14 E3 SUMO-protein ligase PIAS2 OS Rattus norvegicus GN Pias2 PE 1 SV 1
rpsblast_cdd gnl|CDD|111745 120 169 + 50 none 100.00 50 46.00 3e-16 pfam02891 zf-MIZ MIZ/SP-RING zinc finger. This domain has SUMO (small ubiquitin-like modifier) ligase activity and is involved in DNA repair and chromosome organisation.
rpsblast_kog gnl|CDD|37380 107 206 + 100 Gaps:3 15.25 636 38.14 9e-17 KOG2169 KOG2169 KOG2169 Zn-finger transcription factor [Transcription].

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 622 630 9 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 1 602 602 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 603 621 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Gene3D 108 189 82 G3DSA:3.30.40.10 none none IPR013083
Pfam 120 168 49 PF02891 "UniPathway:UPA00886" MIZ/SP-RING zinc finger IPR004181
PANTHER 18 592 575 PTHR10782 none none none
PANTHER 18 592 575 PTHR10782:SF34 "UniPathway:UPA00886";signature_desc=E3 SUMO-PROTEIN LIGASE SIZ1 (PTHR10782:SF34) none IPR031141
ProSiteProfiles 109 186 78 PS51044 "UniPathway:UPA00886" Zinc finger SP-RING-type profile. IPR004181

1 Localization

Analysis Start End Length
TMHMM 603 622 19

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04

0 Targeting