Protein : Qrob_P0455040.2 Q. robur
Protein Identifier  ? Qrob_P0455040.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=3) K03231 - elongation factor EF-1 alpha subunit [EC:3.6.5.3] Code Enzyme  EC:3.6.5.3
Gene Prediction Quality  validated Protein length 

Sequence

Length: 448  
Kegg Orthology  K03231
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0005737 cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO:0005525 GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
GO:0003746 translation elongation factor activity Functions in chain elongation during polypeptide synthesis at the ribosome.
GO:0006414 translational elongation The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis.
GO:0003924 GTPase activity Catalysis of the reaction: GTP + H2O = GDP + phosphate.

50 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|gmx:100785429 1 447 + 447 none 100.00 447 97.54 0.0 elongation factor 1-alpha-like
blastp_kegg lcl|pop:POPTR_0010s22620g 1 446 + 446 none 99.33 449 97.76 0.0 POPTRDRAFT_659836 POPTRDRAFT_659840 hypothetical protein
blastp_kegg lcl|pop:POPTR_0010s22570g 1 446 + 446 none 99.33 449 97.76 0.0 POPTRDRAFT_567566 hypothetical protein
blastp_kegg lcl|fve:101312223 1 447 + 447 none 100.00 447 97.76 0.0 elongation factor 1-alpha 1-like
blastp_kegg lcl|rcu:RCOM_1101130 1 446 + 446 none 99.33 449 97.76 0.0 elongation factor 1-alpha putative (EC:2.7.7.4)
blastp_kegg lcl|tcc:TCM_043092 1 446 + 446 none 99.33 449 97.53 0.0 GTP binding Elongation factor Tu family protein isoform 1
blastp_kegg lcl|pop:POPTR_0010s22560g 1 446 + 446 none 99.33 449 97.53 0.0 hypothetical protein
blastp_kegg lcl|vvi:100246711 1 447 + 447 none 100.00 447 97.54 0.0 elongation factor 1-alpha-like
blastp_kegg lcl|vvi:100256979 1 447 + 447 none 100.00 447 97.54 0.0 elongation factor 1-alpha-like
blastp_kegg lcl|pvu:PHAVU_004G060000g 1 447 + 447 none 100.00 447 97.09 0.0 hypothetical protein
blastp_pdb 2b7c_A 1 433 + 433 Gaps:14 96.72 458 74.04 0.0 mol:protein length:458 Elongation factor 1-alpha
blastp_pdb 2b7b_A 1 433 + 433 Gaps:14 96.72 458 74.04 0.0 mol:protein length:458 Elongation factor 1-alpha
blastp_pdb 1ijf_A 1 433 + 433 Gaps:14 96.72 458 74.04 0.0 mol:protein length:458 elongation factor 1-alpha
blastp_pdb 1ije_A 1 433 + 433 Gaps:14 96.72 458 74.04 0.0 mol:protein length:458 elongation factor 1-alpha
blastp_pdb 1g7c_A 1 433 + 433 Gaps:14 96.72 458 74.04 0.0 mol:protein length:458 ELONGATION FACTOR 1-ALPHA
blastp_pdb 1f60_A 1 433 + 433 Gaps:14 96.72 458 74.04 0.0 mol:protein length:458 ELONGATION FACTOR EEF1A
blastp_pdb 3agj_G 4 430 + 427 Gaps:1 97.48 437 52.82 1e-168 mol:protein length:437 Elongation factor 1-alpha
blastp_pdb 3agj_E 4 430 + 427 Gaps:1 97.48 437 52.82 1e-168 mol:protein length:437 Elongation factor 1-alpha
blastp_pdb 3agj_C 4 430 + 427 Gaps:1 97.48 437 52.82 1e-168 mol:protein length:437 Elongation factor 1-alpha
blastp_pdb 3agj_A 4 430 + 427 Gaps:1 97.48 437 52.82 1e-168 mol:protein length:437 Elongation factor 1-alpha
blastp_uniprot_sprot sp|O64937|EF1A_ORYSJ 1 447 + 447 none 100.00 447 96.87 0.0 Elongation factor 1-alpha OS Oryza sativa subsp. japonica GN REFA1 PE 2 SV 2
blastp_uniprot_sprot sp|O49169|EF1A_MANES 1 446 + 446 none 99.33 449 97.76 0.0 Elongation factor 1-alpha OS Manihot esculenta GN EF1 PE 3 SV 1
blastp_uniprot_sprot sp|O24534|EF1A_VICFA 1 447 + 447 none 100.00 447 96.20 0.0 Elongation factor 1-alpha OS Vicia faba PE 2 SV 1
blastp_uniprot_sprot sp|Q41803|EF1A_MAIZE 1 447 + 447 none 100.00 447 96.64 0.0 Elongation factor 1-alpha OS Zea mays GN EF1A PE 3 SV 1
blastp_uniprot_sprot sp|Q8GTY0|EF1A4_ARATH 1 446 + 446 none 99.33 449 96.19 0.0 Elongation factor 1-alpha 4 OS Arabidopsis thaliana GN A4 PE 1 SV 2
blastp_uniprot_sprot sp|Q0WL56|EF1A3_ARATH 1 446 + 446 none 99.33 449 96.19 0.0 Elongation factor 1-alpha 3 OS Arabidopsis thaliana GN A3 PE 1 SV 2
blastp_uniprot_sprot sp|Q8W4H7|EF1A2_ARATH 1 446 + 446 none 99.33 449 96.19 0.0 Elongation factor 1-alpha 2 OS Arabidopsis thaliana GN A2 PE 1 SV 2
blastp_uniprot_sprot sp|P0DH99|EF1A1_ARATH 1 446 + 446 none 99.33 449 96.19 0.0 Elongation factor 1-alpha 1 OS Arabidopsis thaliana GN A1 PE 1 SV 1
blastp_uniprot_sprot sp|Q03033|EF1A_WHEAT 1 447 + 447 none 100.00 447 95.97 0.0 Elongation factor 1-alpha OS Triticum aestivum GN TEF1 PE 2 SV 1
blastp_uniprot_sprot sp|P43643|EF1A_TOBAC 1 447 + 447 none 100.00 447 95.97 0.0 Elongation factor 1-alpha OS Nicotiana tabacum PE 2 SV 1

20 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 230 337 108 G3DSA:2.40.30.10 none none none
SUPERFAMILY 326 429 104 SSF50465 none none IPR009001
SUPERFAMILY 226 321 96 SSF50447 none none IPR009000
Gene3D 4 222 219 G3DSA:3.40.50.300 none none IPR027417
TIGRFAM 1 433 433 TIGR00483 none EF-1_alpha: translation elongation factor EF-1, subunit alpha IPR004539
Pfam 6 222 217 PF00009 none Elongation factor Tu GTP binding domain none
ProSitePatterns 61 76 16 PS00301 none Translational (tr)-type guanine nucleotide-binding (G) domain signature. IPR031157
PANTHER 1 445 445 PTHR23115:SF109 none none none
ProSiteProfiles 5 230 226 PS51722 none Translational (tr)-type guanine nucleotide-binding (G) domain profile. IPR000795
Gene3D 338 429 92 G3DSA:2.40.30.10 none none none
PRINTS 88 98 11 PR00315 none GTP-binding elongation factor signature IPR000795
PRINTS 9 22 14 PR00315 none GTP-binding elongation factor signature IPR000795
PRINTS 104 115 12 PR00315 none GTP-binding elongation factor signature IPR000795
PRINTS 148 157 10 PR00315 none GTP-binding elongation factor signature IPR000795
PRINTS 68 76 9 PR00315 none GTP-binding elongation factor signature IPR000795
Pfam 322 429 108 PF03143 none Elongation factor Tu C-terminal domain IPR004160
Pfam 248 313 66 PF03144 none Elongation factor Tu domain 2 IPR004161
Hamap 2 432 431 MF_00118_A none Elongation factor Tu [tuf]. IPR004539
PANTHER 1 445 445 PTHR23115 none none none
SUPERFAMILY 3 249 247 SSF52540 none none IPR027417

0 Localization

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04

0 Targeting