Protein : Qrob_P0453300.2 Q. robur
Protein Identifier  ? Qrob_P0453300.2 Organism . Name  Quercus robur
Score  98.0 Score Type  egn
Protein Description  (M=18) K04567 - lysyl-tRNA synthetase, class II [EC:6.1.1.6] Code Enzyme  EC:6.1.1.6
Gene Prediction Quality  validated Protein length 

Sequence

Length: 578  
Kegg Orthology  K04567
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0 Synonyms

8 GO Terms

Identifier Name Description
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0005737 cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO:0000166 nucleotide binding Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO:0004812 aminoacyl-tRNA ligase activity Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP.
GO:0006418 tRNA aminoacylation for protein translation The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis.
GO:0004824 lysine-tRNA ligase activity Catalysis of the reaction: ATP + L-lysine + tRNA(Lys) = AMP + diphosphate + L-lysyl-tRNA(Lys).
GO:0006430 lysyl-tRNA aminoacylation The process of coupling lysine to lysyl-tRNA, catalyzed by lysyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA.

45 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100262532 13 562 + 550 Gaps:8 89.82 619 81.12 0.0 lysyl-tRNA synthetase-like
blastp_kegg lcl|vvi:100242505 13 561 + 549 Gaps:8 89.52 620 80.90 0.0 lysyl-tRNA synthetase-like
blastp_kegg lcl|tcc:TCM_019889 19 562 + 544 Gaps:11 89.23 613 81.35 0.0 Lysyl-tRNA synthetase 1 isoform 1
blastp_kegg lcl|cmo:103492812 20 561 + 542 Gaps:8 79.54 689 81.20 0.0 lysine--tRNA ligase
blastp_kegg lcl|pmum:103323536 12 564 + 553 Gaps:10 91.40 616 78.33 0.0 lysine--tRNA ligase
blastp_kegg lcl|pper:PRUPE_ppa016996mg 9 569 + 561 Gaps:11 97.44 585 77.89 0.0 hypothetical protein
blastp_kegg lcl|csv:101204394 11 561 + 551 Gaps:8 80.49 692 78.64 0.0 lysine--tRNA ligase-like
blastp_kegg lcl|pmum:103323559 12 569 + 558 Gaps:11 85.91 660 77.95 0.0 lysine--tRNA ligase-like
blastp_kegg lcl|pper:PRUPE_ppa003157mg 17 564 + 548 Gaps:10 93.47 597 78.14 0.0 hypothetical protein
blastp_kegg lcl|rcu:RCOM_0435350 21 564 + 544 Gaps:10 90.28 607 79.38 0.0 lysyl-tRNA synthetase putative (EC:6.1.1.6)
blastp_pdb 3bju_D 32 558 + 527 Gaps:37 97.50 521 59.65 0.0 mol:protein length:521 Lysyl-tRNA synthetase
blastp_pdb 3bju_C 32 558 + 527 Gaps:37 97.50 521 59.65 0.0 mol:protein length:521 Lysyl-tRNA synthetase
blastp_pdb 3bju_B 32 558 + 527 Gaps:37 97.50 521 59.65 0.0 mol:protein length:521 Lysyl-tRNA synthetase
blastp_pdb 3bju_A 32 558 + 527 Gaps:37 97.50 521 59.65 0.0 mol:protein length:521 Lysyl-tRNA synthetase
blastp_pdb 3e9i_D 52 554 + 503 Gaps:52 95.13 493 46.27 3e-127 mol:protein length:493 Lysyl-tRNA synthetase
blastp_pdb 3e9i_C 52 554 + 503 Gaps:52 95.13 493 46.27 3e-127 mol:protein length:493 Lysyl-tRNA synthetase
blastp_pdb 3e9i_B 52 554 + 503 Gaps:52 95.13 493 46.27 3e-127 mol:protein length:493 Lysyl-tRNA synthetase
blastp_pdb 3e9i_A 52 554 + 503 Gaps:52 95.13 493 46.27 3e-127 mol:protein length:493 Lysyl-tRNA synthetase
blastp_pdb 3e9h_D 52 554 + 503 Gaps:52 95.13 493 46.27 3e-127 mol:protein length:493 Lysyl-tRNA synthetase
blastp_pdb 3e9h_C 52 554 + 503 Gaps:52 95.13 493 46.27 3e-127 mol:protein length:493 Lysyl-tRNA synthetase
blastp_uniprot_sprot sp|Q9ZPI1|SYK_ARATH 12 561 + 550 Gaps:13 88.02 626 75.68 0.0 Lysine--tRNA ligase OS Arabidopsis thaliana GN At3g11710 PE 2 SV 1
blastp_uniprot_sprot sp|Q6F2U9|SYK_ORYSJ 23 557 + 535 Gaps:16 88.87 602 75.33 0.0 Lysine--tRNA ligase OS Oryza sativa subsp. japonica GN Os03g0586800 PE 2 SV 1
blastp_uniprot_sprot sp|Q43776|SYK_SOLLC 12 556 + 545 Gaps:14 94.73 588 63.02 0.0 Lysine--tRNA ligase OS Solanum lycopersicum GN LYSRS PE 2 SV 1
blastp_uniprot_sprot sp|Q99MN1|SYK_MOUSE 10 564 + 555 Gaps:37 90.08 595 58.77 0.0 Lysine--tRNA ligase OS Mus musculus GN Kars PE 1 SV 1
blastp_uniprot_sprot sp|P37879|SYK_CRIGR 24 558 + 535 Gaps:37 86.43 597 59.88 0.0 Lysine--tRNA ligase OS Cricetulus griseus GN KARS PE 1 SV 1
blastp_uniprot_sprot sp|Q15046|SYK_HUMAN 24 558 + 535 Gaps:37 86.43 597 58.91 0.0 Lysine--tRNA ligase OS Homo sapiens GN KARS PE 1 SV 3
blastp_uniprot_sprot sp|Q9UUE6|SYKC_SCHPO 21 556 + 536 Gaps:44 88.32 591 55.56 0.0 Lysine--tRNA ligase cytoplasmic OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN krs1 PE 3 SV 1
blastp_uniprot_sprot sp|Q22099|SYK_CAEEL 33 557 + 525 Gaps:39 88.46 572 56.32 0.0 Lysine--tRNA ligase OS Caenorhabditis elegans GN krs-1 PE 3 SV 1
blastp_uniprot_sprot sp|P15180|SYKC_YEAST 31 555 + 525 Gaps:45 86.63 591 55.27 0.0 Lysine--tRNA ligase cytoplasmic OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN KRS1 PE 1 SV 2
blastp_uniprot_sprot sp|Q8SS56|SYKC_ENCCU 52 556 + 505 Gaps:44 94.31 510 54.05 9e-172 Probable lysine--tRNA ligase cytoplasmic OS Encephalitozoon cuniculi (strain GB-M1) GN ECU04_0580 PE 3 SV 2

17 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 12 561 550 PTHR22594:SF4 none none none
Gene3D 209 552 344 G3DSA:3.30.930.10 none none none
Pfam 211 554 344 PF00152 "Reactome:REACT_71" tRNA synthetases class II (D, K and N) IPR004364
PIRSF 8 567 560 PIRSF039101 "KEGG:00970+6.1.1.6" none IPR002313
SUPERFAMILY 211 554 344 SSF55681 none none none
TIGRFAM 208 556 349 TIGR00499 "KEGG:00970+6.1.1.6" lysS_bact: lysine--tRNA ligase IPR002313
ProSiteProfiles 233 555 323 PS50862 "Reactome:REACT_71" Aminoacyl-transfer RNA synthetases class-II family profile. IPR006195
SUPERFAMILY 32 177 146 SSF50249 none none IPR012340
PANTHER 12 561 550 PTHR22594 "Reactome:REACT_71";signature_desc=ASPARTYL/LYSYL-TRNA SYNTHETASE none IPR018150
Gene3D 35 177 143 G3DSA:2.40.50.140 none none IPR012340
Hamap 40 558 519 MF_00252 "KEGG:00970+6.1.1.6" Lysine--tRNA ligase [lysS]. IPR002313
PRINTS 293 306 14 PR00982 "KEGG:00970+6.1.1.6" Lysyl-tRNA synthetase signature IPR018149
PRINTS 248 258 11 PR00982 "KEGG:00970+6.1.1.6" Lysyl-tRNA synthetase signature IPR018149
PRINTS 438 454 17 PR00982 "KEGG:00970+6.1.1.6" Lysyl-tRNA synthetase signature IPR018149
PRINTS 264 280 17 PR00982 "KEGG:00970+6.1.1.6" Lysyl-tRNA synthetase signature IPR018149
PRINTS 311 328 18 PR00982 "KEGG:00970+6.1.1.6" Lysyl-tRNA synthetase signature IPR018149
Pfam 87 166 80 PF01336 none OB-fold nucleic acid binding domain IPR004365

0 Localization

1 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5

0 Targeting