Protein : Qrob_P0453280.2 Q. robur
Protein Identifier  ? Qrob_P0453280.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=18) K04567 - lysyl-tRNA synthetase, class II [EC:6.1.1.6] Code Enzyme  EC:6.1.1.6
Gene Prediction Quality  validated Protein length 

Sequence

Length: 520  
Kegg Orthology  K04567
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0 Synonyms

8 GO Terms

Identifier Name Description
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0005737 cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO:0000166 nucleotide binding Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO:0004812 aminoacyl-tRNA ligase activity Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP.
GO:0006418 tRNA aminoacylation for protein translation The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis.
GO:0004824 lysine-tRNA ligase activity Catalysis of the reaction: ATP + L-lysine + tRNA(Lys) = AMP + diphosphate + L-lysyl-tRNA(Lys).
GO:0006430 lysyl-tRNA aminoacylation The process of coupling lysine to lysyl-tRNA, catalyzed by lysyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA.

45 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100262532 17 515 + 499 Gaps:3 79.81 619 81.38 0.0 lysyl-tRNA synthetase-like
blastp_kegg lcl|vvi:100242505 17 515 + 499 Gaps:3 79.68 620 80.97 0.0 lysyl-tRNA synthetase-like
blastp_kegg lcl|mtr:MTR_4g127770 17 509 + 493 Gaps:77 82.76 1137 73.22 0.0 Lysyl-tRNA synthetase
blastp_kegg lcl|cit:102615402 17 515 + 499 Gaps:6 75.42 651 79.23 0.0 lysine--tRNA ligase-like
blastp_kegg lcl|pmum:103323536 17 515 + 499 Gaps:4 80.68 616 78.47 0.0 lysine--tRNA ligase
blastp_kegg lcl|tcc:TCM_019889 17 515 + 499 Gaps:6 79.12 613 81.24 0.0 Lysyl-tRNA synthetase 1 isoform 1
blastp_kegg lcl|pper:PRUPE_ppa016996mg 17 515 + 499 Gaps:5 84.79 585 79.23 0.0 hypothetical protein
blastp_kegg lcl|pmum:103323559 17 515 + 499 Gaps:5 75.15 660 79.23 0.0 lysine--tRNA ligase-like
blastp_kegg lcl|pper:PRUPE_ppa003157mg 17 515 + 499 Gaps:4 82.58 597 78.30 0.0 hypothetical protein
blastp_kegg lcl|crb:CARUB_v10013215mg 17 509 + 493 Gaps:8 77.00 626 79.46 0.0 hypothetical protein
blastp_pdb 3bju_D 17 519 + 503 Gaps:30 86.76 521 60.18 4e-122 mol:protein length:521 Lysyl-tRNA synthetase
blastp_pdb 3bju_C 17 519 + 503 Gaps:30 86.76 521 60.18 4e-122 mol:protein length:521 Lysyl-tRNA synthetase
blastp_pdb 3bju_B 17 519 + 503 Gaps:30 86.76 521 60.18 4e-122 mol:protein length:521 Lysyl-tRNA synthetase
blastp_pdb 3bju_A 17 519 + 503 Gaps:30 86.76 521 60.18 4e-122 mol:protein length:521 Lysyl-tRNA synthetase
blastp_pdb 3e9i_D 23 497 + 475 Gaps:36 81.14 493 50.50 5e-68 mol:protein length:493 Lysyl-tRNA synthetase
blastp_pdb 3e9i_C 23 497 + 475 Gaps:36 81.14 493 50.50 5e-68 mol:protein length:493 Lysyl-tRNA synthetase
blastp_pdb 3e9i_B 23 497 + 475 Gaps:36 81.14 493 50.50 5e-68 mol:protein length:493 Lysyl-tRNA synthetase
blastp_pdb 3e9i_A 23 497 + 475 Gaps:36 81.14 493 50.50 5e-68 mol:protein length:493 Lysyl-tRNA synthetase
blastp_pdb 3e9h_D 23 497 + 475 Gaps:36 81.14 493 50.50 5e-68 mol:protein length:493 Lysyl-tRNA synthetase
blastp_pdb 3e9h_C 23 497 + 475 Gaps:36 81.14 493 50.50 5e-68 mol:protein length:493 Lysyl-tRNA synthetase
blastp_uniprot_sprot sp|Q9ZPI1|SYK_ARATH 17 515 + 499 Gaps:8 77.16 626 77.43 0.0 Lysine--tRNA ligase OS Arabidopsis thaliana GN At3g11710 PE 2 SV 1
blastp_uniprot_sprot sp|Q6F2U9|SYK_ORYSJ 17 515 + 499 Gaps:13 79.40 602 75.10 6e-175 Lysine--tRNA ligase OS Oryza sativa subsp. japonica GN Os03g0586800 PE 2 SV 1
blastp_uniprot_sprot sp|Q43776|SYK_SOLLC 17 507 + 491 Gaps:9 84.35 588 64.31 3e-164 Lysine--tRNA ligase OS Solanum lycopersicum GN LYSRS PE 2 SV 1
blastp_uniprot_sprot sp|Q99MN1|SYK_MOUSE 17 519 + 503 Gaps:35 85.38 595 57.68 8e-130 Lysine--tRNA ligase OS Mus musculus GN Kars PE 1 SV 1
blastp_uniprot_sprot sp|P37879|SYK_CRIGR 17 519 + 503 Gaps:35 81.57 597 58.52 3e-126 Lysine--tRNA ligase OS Cricetulus griseus GN KARS PE 1 SV 1
blastp_uniprot_sprot sp|Q15046|SYK_HUMAN 17 519 + 503 Gaps:30 76.38 597 59.87 1e-122 Lysine--tRNA ligase OS Homo sapiens GN KARS PE 1 SV 3
blastp_uniprot_sprot sp|Q9UUE6|SYKC_SCHPO 17 509 + 493 Gaps:37 77.16 591 56.80 7e-114 Lysine--tRNA ligase cytoplasmic OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN krs1 PE 3 SV 1
blastp_uniprot_sprot sp|Q22099|SYK_CAEEL 17 509 + 493 Gaps:32 77.10 572 57.82 9e-110 Lysine--tRNA ligase OS Caenorhabditis elegans GN krs-1 PE 3 SV 1
blastp_uniprot_sprot sp|P15180|SYKC_YEAST 17 515 + 499 Gaps:38 76.65 591 56.95 5e-109 Lysine--tRNA ligase cytoplasmic OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN KRS1 PE 1 SV 2
blastp_uniprot_sprot sp|Q8SS56|SYKC_ENCCU 17 509 + 493 Gaps:38 81.96 510 56.94 4e-88 Probable lysine--tRNA ligase cytoplasmic OS Encephalitozoon cuniculi (strain GB-M1) GN ECU04_0580 PE 3 SV 2

16 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 335 507 173 SSF55681 none none none
ProSiteProfiles 357 471 115 PS50862 "Reactome:REACT_71" Aminoacyl-transfer RNA synthetases class-II family profile. IPR006195
Gene3D 159 301 143 G3DSA:2.40.50.140 none none IPR012340
Pfam 211 290 80 PF01336 none OB-fold nucleic acid binding domain IPR004365
PRINTS 435 452 18 PR00982 "KEGG:00970+6.1.1.6" Lysyl-tRNA synthetase signature IPR018149
PRINTS 388 404 17 PR00982 "KEGG:00970+6.1.1.6" Lysyl-tRNA synthetase signature IPR018149
PRINTS 417 430 14 PR00982 "KEGG:00970+6.1.1.6" Lysyl-tRNA synthetase signature IPR018149
PRINTS 372 382 11 PR00982 "KEGG:00970+6.1.1.6" Lysyl-tRNA synthetase signature IPR018149
PANTHER 137 512 376 PTHR22594 "Reactome:REACT_71";signature_desc=ASPARTYL/LYSYL-TRNA SYNTHETASE none IPR018150
SUPERFAMILY 156 301 146 SSF50249 none none IPR012340
PANTHER 137 512 376 PTHR22594:SF4 none none none
SUPERFAMILY 17 134 118 SSF55681 none none none
Gene3D 333 491 159 G3DSA:3.30.930.10 none none none
Gene3D 17 134 118 G3DSA:3.30.930.10 none none none
Pfam 335 473 139 PF00152 "Reactome:REACT_71" tRNA synthetases class II (D, K and N) IPR004364
Pfam 23 134 112 PF00152 "Reactome:REACT_71" tRNA synthetases class II (D, K and N) IPR004364

0 Localization

1 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5

0 Targeting