Protein : Qrob_P0453190.2 Q. robur
Protein Identifier  ? Qrob_P0453190.2 Organism . Name  Quercus robur
Score  3.1 Score Type  egn
Protein Description  (M=2) KOG0554//KOG0556//KOG1885//KOG2411 - Asparaginyl-tRNA synthetase (mitochondrial) [Translation ribosomal structure and biogenesis]. // Aspartyl-tRNA synthetase [Translation ribosomal structure and biogenesis]. // Lysyl-tRNA synthetase (class II) [Translation ribosomal structure and biogenesis]. // Aspartyl-tRNA synthetase mitochondrial [Translation ribosomal structure and biogenesis]. Code Enzyme  EC:6.1.1.6
Gene Prediction Quality  validated Protein length 

Sequence

Length: 423  
Kegg Orthology  K04567
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0 Synonyms

7 GO Terms

Identifier Name Description
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0005737 cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO:0000166 nucleotide binding Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO:0004812 aminoacyl-tRNA ligase activity Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP.
GO:0006418 tRNA aminoacylation for protein translation The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis.
GO:0004824 lysine-tRNA ligase activity Catalysis of the reaction: ATP + L-lysine + tRNA(Lys) = AMP + diphosphate + L-lysyl-tRNA(Lys).
GO:0006430 lysyl-tRNA aminoacylation The process of coupling lysine to lysyl-tRNA, catalyzed by lysyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA.

44 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100262532 17 411 + 395 Gaps:15 63.33 619 74.74 0.0 lysyl-tRNA synthetase-like
blastp_kegg lcl|vvi:100242505 17 411 + 395 Gaps:15 63.23 620 74.49 0.0 lysyl-tRNA synthetase-like
blastp_kegg lcl|cmo:103492812 17 411 + 395 Gaps:15 56.89 689 74.23 0.0 lysine--tRNA ligase
blastp_kegg lcl|csv:101204394 17 411 + 395 Gaps:15 56.65 692 73.98 0.0 lysine--tRNA ligase-like
blastp_kegg lcl|tcc:TCM_019889 14 411 + 398 Gaps:18 63.95 613 74.23 0.0 Lysyl-tRNA synthetase 1 isoform 1
blastp_kegg lcl|cic:CICLE_v10007700mg 14 411 + 398 Gaps:17 77.36 508 72.01 0.0 hypothetical protein
blastp_kegg lcl|cit:102615402 14 411 + 398 Gaps:17 60.37 651 72.01 0.0 lysine--tRNA ligase-like
blastp_kegg lcl|pper:PRUPE_ppa003157mg 15 411 + 397 Gaps:16 66.16 597 71.65 0.0 hypothetical protein
blastp_kegg lcl|pmum:103323536 15 411 + 397 Gaps:16 64.12 616 71.90 0.0 lysine--tRNA ligase
blastp_kegg lcl|pop:POPTR_0018s09780g 14 409 + 396 Gaps:16 66.10 593 72.45 0.0 hypothetical protein
blastp_pdb 3bju_D 13 414 + 402 Gaps:43 71.98 521 54.67 2e-130 mol:protein length:521 Lysyl-tRNA synthetase
blastp_pdb 3bju_C 13 414 + 402 Gaps:43 71.98 521 54.67 2e-130 mol:protein length:521 Lysyl-tRNA synthetase
blastp_pdb 3bju_B 13 414 + 402 Gaps:43 71.98 521 54.67 2e-130 mol:protein length:521 Lysyl-tRNA synthetase
blastp_pdb 3bju_A 13 414 + 402 Gaps:43 71.98 521 54.67 2e-130 mol:protein length:521 Lysyl-tRNA synthetase
blastp_pdb 3e9i_D 16 399 + 384 Gaps:53 69.57 493 40.82 1e-68 mol:protein length:493 Lysyl-tRNA synthetase
blastp_pdb 3e9i_C 16 399 + 384 Gaps:53 69.57 493 40.82 1e-68 mol:protein length:493 Lysyl-tRNA synthetase
blastp_pdb 3e9i_B 16 399 + 384 Gaps:53 69.57 493 40.82 1e-68 mol:protein length:493 Lysyl-tRNA synthetase
blastp_pdb 3e9i_A 16 399 + 384 Gaps:53 69.57 493 40.82 1e-68 mol:protein length:493 Lysyl-tRNA synthetase
blastp_pdb 3e9h_D 16 399 + 384 Gaps:53 69.57 493 40.82 1e-68 mol:protein length:493 Lysyl-tRNA synthetase
blastp_pdb 3e9h_C 16 399 + 384 Gaps:53 69.57 493 40.82 1e-68 mol:protein length:493 Lysyl-tRNA synthetase
blastp_uniprot_sprot sp|Q9ZPI1|SYK_ARATH 14 411 + 398 Gaps:20 62.30 626 68.72 0.0 Lysine--tRNA ligase OS Arabidopsis thaliana GN At3g11710 PE 2 SV 1
blastp_uniprot_sprot sp|Q6F2U9|SYK_ORYSJ 17 411 + 395 Gaps:21 64.12 602 68.91 0.0 Lysine--tRNA ligase OS Oryza sativa subsp. japonica GN Os03g0586800 PE 2 SV 1
blastp_uniprot_sprot sp|Q43776|SYK_SOLLC 13 411 + 399 Gaps:21 68.37 588 57.46 7e-163 Lysine--tRNA ligase OS Solanum lycopersicum GN LYSRS PE 2 SV 1
blastp_uniprot_sprot sp|P37879|SYK_CRIGR 13 414 + 402 Gaps:43 62.81 597 55.47 5e-131 Lysine--tRNA ligase OS Cricetulus griseus GN KARS PE 1 SV 1
blastp_uniprot_sprot sp|Q99MN1|SYK_MOUSE 13 414 + 402 Gaps:43 63.03 595 54.93 4e-130 Lysine--tRNA ligase OS Mus musculus GN Kars PE 1 SV 1
blastp_uniprot_sprot sp|Q15046|SYK_HUMAN 13 414 + 402 Gaps:43 62.81 597 54.67 1e-129 Lysine--tRNA ligase OS Homo sapiens GN KARS PE 1 SV 3
blastp_uniprot_sprot sp|Q9UUE6|SYKC_SCHPO 13 403 + 391 Gaps:49 62.27 591 51.09 8e-116 Lysine--tRNA ligase cytoplasmic OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN krs1 PE 3 SV 1
blastp_uniprot_sprot sp|Q22099|SYK_CAEEL 8 399 + 392 Gaps:44 63.99 572 48.09 3e-108 Lysine--tRNA ligase OS Caenorhabditis elegans GN krs-1 PE 3 SV 1
blastp_uniprot_sprot sp|P15180|SYKC_YEAST 7 399 + 393 Gaps:56 61.76 591 50.14 6e-107 Lysine--tRNA ligase cytoplasmic OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN KRS1 PE 1 SV 2
blastp_uniprot_sprot sp|C4V8R9|SYKC_NOSCE 29 399 + 371 Gaps:44 67.12 514 48.41 2e-98 Probable lysine--tRNA ligase cytoplasmic OS Nosema ceranae (strain BRL01) GN NCER_100909 PE 3 SV 1

12 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 112 403 292 SSF55681 none none none
ProSiteProfiles 134 372 239 PS50862 "Reactome:REACT_71" Aminoacyl-transfer RNA synthetases class-II family profile. IPR006195
Gene3D 15 69 55 G3DSA:2.40.50.140 none none IPR012340
SUPERFAMILY 15 69 55 SSF50249 none none IPR012340
Gene3D 112 403 292 G3DSA:3.30.930.10 none none none
PRINTS 192 205 14 PR00982 "KEGG:00970+6.1.1.6" Lysyl-tRNA synthetase signature IPR018149
PRINTS 165 181 17 PR00982 "KEGG:00970+6.1.1.6" Lysyl-tRNA synthetase signature IPR018149
PRINTS 340 356 17 PR00982 "KEGG:00970+6.1.1.6" Lysyl-tRNA synthetase signature IPR018149
PRINTS 149 159 11 PR00982 "KEGG:00970+6.1.1.6" Lysyl-tRNA synthetase signature IPR018149
Pfam 113 398 286 PF00152 "Reactome:REACT_71" tRNA synthetases class II (D, K and N) IPR004364
PANTHER 14 399 386 PTHR22594:SF4 none none none
PANTHER 14 399 386 PTHR22594 "Reactome:REACT_71";signature_desc=ASPARTYL/LYSYL-TRNA SYNTHETASE none IPR018150

0 Localization

1 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5

0 Targeting