Protein : Qrob_P0451700.2 Q. robur
Protein Identifier  ? Qrob_P0451700.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) PTHR10625//PTHR10625:SF115 - HISTONE DEACETYLASE // SUBFAMILY NOT NAMED Code Enzyme  EC:3.5.1.98
Gene Prediction Quality  validated Protein length 

Sequence

Length: 336  
Kegg Orthology  K06067
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0016575 histone deacetylation The modification of histones by removal of acetyl groups.
GO:0004407 histone deacetylase activity Catalysis of the reaction: histone N6-acetyl-L-lysine + H2O = histone L-lysine + acetate. This reaction represents the removal of an acetyl group from a histone, a class of proteins complexed to DNA in chromatin and chromosomes.

37 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103338167 1 325 + 325 Gaps:29 79.78 371 89.53 0.0 histone deacetylase 6
blastp_kegg lcl|pvu:PHAVU_009G175000g 1 316 + 316 Gaps:69 82.97 464 65.45 9e-174 hypothetical protein
blastp_kegg lcl|eus:EUTSA_v10005608mg 1 330 + 330 Gaps:67 84.47 470 64.23 2e-169 hypothetical protein
blastp_kegg lcl|pop:POPTR_0015s09400g 1 328 + 328 none 70.24 467 87.80 2e-169 POPTRDRAFT_252260 hypothetical protein
blastp_kegg lcl|gmx:100801159 1 334 + 334 Gaps:69 86.85 464 63.77 3e-169 histone deacetylase 6-like
blastp_kegg lcl|csv:101204443 1 333 + 333 Gaps:1 71.40 465 89.76 1e-168 histone deacetylase 6-like
blastp_kegg lcl|pxb:103953048 75 325 + 251 none 83.11 302 88.84 8e-168 histone deacetylase 6-like
blastp_kegg lcl|pvu:PHAVU_003G203800g 1 327 + 327 none 68.84 475 89.60 8e-168 hypothetical protein
blastp_kegg lcl|rcu:RCOM_1509350 1 329 + 329 Gaps:1 70.09 468 88.41 1e-167 histone deacetylase 1 2 3 putative
blastp_kegg lcl|cit:102617679 1 334 + 334 none 71.83 465 88.32 1e-166 histone deacetylase 6-like
blastp_pdb 4a69_B 1 285 + 285 Gaps:67 93.62 376 45.74 5e-109 mol:protein length:376 HISTONE DEACETYLASE 3
blastp_pdb 4a69_A 1 285 + 285 Gaps:67 93.62 376 45.74 5e-109 mol:protein length:376 HISTONE DEACETYLASE 3
blastp_pdb 3max_C 1 279 + 279 Gaps:2 75.48 367 64.98 9e-98 mol:protein length:367 Histone deacetylase 2
blastp_pdb 3max_B 1 279 + 279 Gaps:2 75.48 367 64.98 9e-98 mol:protein length:367 Histone deacetylase 2
blastp_pdb 3max_A 1 279 + 279 Gaps:2 75.48 367 64.98 9e-98 mol:protein length:367 Histone deacetylase 2
blastp_pdb 3sfh_A 3 279 + 277 Gaps:4 72.75 378 41.82 7e-59 mol:protein length:378 Histone deacetylase 8
blastp_pdb 3sff_A 3 279 + 277 Gaps:4 72.75 378 41.82 7e-59 mol:protein length:378 Histone deacetylase 8
blastp_pdb 3f06_B 3 279 + 277 Gaps:4 70.88 388 41.45 8e-59 mol:protein length:388 Histone deacetylase 8
blastp_pdb 3f06_A 3 279 + 277 Gaps:4 70.88 388 41.45 8e-59 mol:protein length:388 Histone deacetylase 8
blastp_pdb 3mz7_A 3 279 + 277 Gaps:4 70.69 389 41.45 8e-59 mol:protein length:389 Histone deacetylase 8
blastp_uniprot_sprot sp|Q9FML2|HDA6_ARATH 1 335 + 335 Gaps:1 71.34 471 80.65 2e-156 Histone deacetylase 6 OS Arabidopsis thaliana GN HDA6 PE 1 SV 1
blastp_uniprot_sprot sp|O22446|HDA19_ARATH 1 307 + 307 Gaps:4 61.28 501 71.01 3e-118 Histone deacetylase 19 OS Arabidopsis thaliana GN HDA19 PE 1 SV 2
blastp_uniprot_sprot sp|Q803C3|HDAC3_DANRE 1 327 + 327 Gaps:77 94.39 428 43.32 2e-110 Histone deacetylase 3 OS Danio rerio GN hdac3 PE 2 SV 1
blastp_uniprot_sprot sp|Q28DV3|HDAC3_XENTR 1 325 + 325 Gaps:73 92.99 428 43.97 3e-110 Histone deacetylase 3 OS Xenopus tropicalis GN hdac3 PE 2 SV 1
blastp_uniprot_sprot sp|P56520|HDAC3_CHICK 1 325 + 325 Gaps:73 92.99 428 43.22 7e-110 Histone deacetylase 3 OS Gallus gallus GN HDAC3 PE 2 SV 1
blastp_uniprot_sprot sp|P56521|HDA19_MAIZE 1 296 + 296 Gaps:6 56.53 513 69.66 8e-110 Probable histone deacetylase 19 OS Zea mays PE 2 SV 1
blastp_uniprot_sprot sp|Q6IRL9|HDAC3_XENLA 1 325 + 325 Gaps:73 92.99 428 43.72 9e-110 Histone deacetylase 3 OS Xenopus laevis GN hdac3 PE 2 SV 2
blastp_uniprot_sprot sp|Q4QQW4|HDAC1_RAT 1 291 + 291 Gaps:2 59.96 482 64.01 2e-109 Histone deacetylase 1 OS Rattus norvegicus GN Hdac1 PE 1 SV 1
blastp_uniprot_sprot sp|Q6P6W3|HDAC3_RAT 1 327 + 327 Gaps:79 94.39 428 42.33 2e-109 Histone deacetylase 3 OS Rattus norvegicus GN Hdac3 PE 1 SV 1
blastp_uniprot_sprot sp|O09106|HDAC1_MOUSE 1 291 + 291 Gaps:2 59.96 482 64.01 2e-109 Histone deacetylase 1 OS Mus musculus GN Hdac1 PE 1 SV 1

11 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 1 68 68 G3DSA:3.40.800.20 none none IPR023801
PRINTS 160 170 11 PR01270 none Histone deacetylase superfamily signature IPR000286
PRINTS 75 90 16 PR01270 none Histone deacetylase superfamily signature IPR000286
Gene3D 69 288 220 G3DSA:3.40.800.20 none none IPR023801
PANTHER 1 335 335 PTHR10625:SF115 none none none
PRINTS 34 52 19 PR01271 none Histone deacetylase signature IPR003084
PRINTS 67 84 18 PR01271 none Histone deacetylase signature IPR003084
PRINTS 1 18 18 PR01271 none Histone deacetylase signature IPR003084
Pfam 72 224 153 PF00850 none Histone deacetylase domain IPR023801
PANTHER 1 335 335 PTHR10625 none none IPR000286
SUPERFAMILY 1 278 278 SSF52768 none none none

0 Localization

7 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL5_peak_Bud_burst_A4 Qrob_Chr10 10 s_1C8OKQ_688 v_12844_707 25,6 13,9 39,9 lod 2,7 6,1
Bourran2_2002_QTL13_peak_Bud_burst_3P Qrob_Chr10 10 s_1B1AG7_637 s_1A3A1N_709 19,44 0 49,44 lod 3 5,6
Bourran2_2002_QTL15_peak_Bud_burst_A4 Qrob_Chr10 10 v_7579_71 s_1ATZMJ_189 23,94 0 43,64 lod 3,7 5,4
Bourran2_2014_vSeqBC_3P Qrob_Chr10 10 s_1A6CK6_610 v_7092_29 4,28 0 23,27 lod 2,8619 7
Bourran2_2014_vSeqBC_A4 Qrob_Chr10 10 s_1BAM4E_1326 s_1C0HD0_1012 36,88 7,71 46,03 lod 2,6164 7,3
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
PM_1999_QTL16_peak_Bud_burst_3P Qrob_Chr10 10 s_1B6YNI_505 s_1A1ZO_1322 7,48 0 31,48 lod 4 7,1

0 Targeting