Protein : Qrob_P0451300.2 Q. robur
Protein Identifier  ? Qrob_P0451300.2 Organism . Name  Quercus robur
Score  72.0 Score Type  egn
Protein Description  (M=1) K03661 - V-type H+-transporting ATPase 21kDa proteolipid subunit [EC:3.6.3.14] Gene Prediction Quality  validated
Protein length 

Sequence

Length: 292  
Kegg Orthology  K03661
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0015991 ATP hydrolysis coupled proton transport The transport of protons against an electrochemical gradient, using energy from ATP hydrolysis.
GO:0015078 hydrogen ion transmembrane transporter activity Enables the transfer of hydrogen ions from one side of a membrane to the other.
GO:0033179 proton-transporting V-type ATPase, V0 domain A protein complex that forms part of a proton-transporting V-type ATPase and mediates proton transport across a membrane. The V0 complex consists of at least four different subunits (a,c,d and e); six or more c subunits form a proton-binding rotor ring.
GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain A protein complex that forms part of a proton-transporting two-sector ATPase complex and carries out proton transport across a membrane. The proton-transporting domain (F0, V0, or A0) includes integral and peripheral membrane proteins.

23 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0006s26480g 10 291 + 282 none 98.28 174 91.81 4e-103 POPTRDRAFT_561839 vacuolar ATP synthase family protein
blastp_kegg lcl|fve:101295776 7 290 + 284 none 95.03 181 93.02 7e-103 V-type proton ATPase 21 kDa proteolipid subunit-like
blastp_kegg lcl|tcc:TCM_038351 10 291 + 282 none 93.96 182 92.98 2e-102 ATPase F0/V0 complex subunit C protein
blastp_kegg lcl|mdm:103454305 7 290 + 284 none 95.03 181 92.44 4e-102 V-type proton ATPase subunit c''
blastp_kegg lcl|pop:POPTR_0018s01260g 10 290 + 281 none 98.26 172 93.49 5e-102 POPTRDRAFT_737110 hypothetical protein
blastp_kegg lcl|cit:102611677 10 290 + 281 none 93.96 182 92.98 7e-102 V-type proton ATPase subunit c''-like
blastp_kegg lcl|pmum:103320048 7 290 + 284 none 95.56 180 91.28 3e-101 V-type proton ATPase subunit c''
blastp_kegg lcl|pper:PRUPE_ppa012193mg 7 290 + 284 none 95.56 180 91.28 3e-101 hypothetical protein
blastp_kegg lcl|mdm:103456165 7 290 + 284 none 95.03 181 91.28 3e-101 V-type proton ATPase subunit c''-like
blastp_kegg lcl|cic:CICLE_v10009643mg 10 290 + 281 none 93.96 182 92.40 4e-101 hypothetical protein
blastp_uniprot_sprot sp|Q91V37|VATO_MOUSE 15 284 + 270 Gaps:4 78.05 205 56.88 3e-55 V-type proton ATPase 21 kDa proteolipid subunit OS Mus musculus GN Atp6v0b PE 1 SV 1
blastp_uniprot_sprot sp|Q99437|VATO_HUMAN 15 284 + 270 Gaps:4 78.05 205 56.88 3e-55 V-type proton ATPase 21 kDa proteolipid subunit OS Homo sapiens GN ATP6V0B PE 2 SV 1
blastp_uniprot_sprot sp|Q2TA24|VATO_BOVIN 15 284 + 270 Gaps:4 78.05 205 56.88 4e-55 V-type proton ATPase 21 kDa proteolipid subunit OS Bos taurus GN ATP6V0B PE 2 SV 1
blastp_uniprot_sprot sp|O14046|VATO_SCHPO 15 286 + 272 none 80.40 199 53.12 2e-53 Probable V-type proton ATPase 20 kDa proteolipid subunit OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN vma16 PE 3 SV 1
blastp_uniprot_sprot sp|P23968|VATO_YEAST 15 268 + 254 none 66.67 213 58.45 6e-46 V-type proton ATPase subunit c'' OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN VMA16 PE 1 SV 1
blastp_uniprot_sprot sp|P23957|VATL_AVESA 26 285 + 260 Gaps:10 86.67 165 37.06 7e-20 V-type proton ATPase 16 kDa proteolipid subunit OS Avena sativa GN VATP-P1 PE 2 SV 1
blastp_uniprot_sprot sp|Q0IUB5|VATL_ORYSJ 26 285 + 260 Gaps:10 86.67 165 37.06 1e-19 V-type proton ATPase 16 kDa proteolipid subunit OS Oryza sativa subsp. japonica GN VATP-P1 PE 2 SV 1
blastp_uniprot_sprot sp|A2ZBW5|VATL_ORYSI 26 285 + 260 Gaps:10 86.67 165 37.06 1e-19 V-type proton ATPase 16 kDa proteolipid subunit OS Oryza sativa subsp. indica GN VATP-P1 PE 2 SV 1
blastp_uniprot_sprot sp|Q40585|VATL_TOBAC 26 285 + 260 Gaps:10 86.67 165 37.06 1e-19 V-type proton ATPase 16 kDa proteolipid subunit OS Nicotiana tabacum PE 2 SV 1
blastp_uniprot_sprot sp|O24011|VATL_SOLLC 26 285 + 260 Gaps:10 87.20 164 37.06 1e-19 V-type proton ATPase 16 kDa proteolipid subunit OS Solanum lycopersicum PE 2 SV 1
rpsblast_cdd gnl|CDD|130170 25 133 + 109 Gaps:6 95.37 108 31.07 3e-07 TIGR01100 V_ATP_synt_C vacuolar ATP synthase 16 kDa proteolipid subunit. This model describes the vacuolar ATP synthase 16 kDa proteolipid subunit in eukaryotes and includes members from diverse groups e.g. fungi plants parasites etc. The principal role V-ATPases are the acidification of intracellular compartments of eukaryotic cells.
rpsblast_kog gnl|CDD|35454 11 288 + 278 Gaps:5 84.69 196 65.06 2e-50 KOG0233 KOG0233 KOG0233 Vacuolar H+-ATPase V0 sector subunit c'' [Energy production and conversion].
rpsblast_kog gnl|CDD|35453 24 286 + 263 Gaps:11 93.59 156 33.56 3e-12 KOG0232 KOG0232 KOG0232 Vacuolar H+-ATPase V0 sector subunits c/c' [Energy production and conversion].

29 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 45 64 20 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 105 132 28 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
SUPERFAMILY 102 170 69 SSF81333 none none IPR002379
Pfam 24 86 63 PF00137 none ATP synthase subunit C IPR002379
Pfam 219 282 64 PF00137 none ATP synthase subunit C IPR002379
Pfam 107 170 64 PF00137 none ATP synthase subunit C IPR002379
Phobius 282 291 10 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 86 104 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 144 169 26 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PRINTS 65 89 25 PR00122 none Vacuolar ATP synthase 16kDa subunit signature IPR000245
PRINTS 39 63 25 PR00122 none Vacuolar ATP synthase 16kDa subunit signature IPR000245
PRINTS 148 171 24 PR00122 none Vacuolar ATP synthase 16kDa subunit signature IPR000245
PRINTS 121 147 27 PR00122 none Vacuolar ATP synthase 16kDa subunit signature IPR000245
SUPERFAMILY 214 282 69 SSF81333 none none IPR002379
Phobius 133 143 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 9 179 171 PTHR10263:SF5 none none none
SUPERFAMILY 21 88 68 SSF81333 none none IPR002379
Phobius 218 244 27 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 170 174 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 9 179 171 PTHR10263 none none none
Phobius 245 255 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 25 44 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 65 85 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Gene3D 13 172 160 G3DSA:1.20.120.610 none none none
Gene3D 179 284 106 G3DSA:1.20.120.610 none none none
Phobius 175 197 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 256 281 26 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1 24 24 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 198 217 20 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none

7 Localization

Analysis Start End Length
TMHMM 218 240 22
TMHMM 107 129 22
TMHMM 149 171 22
TMHMM 23 45 22
TMHMM 175 197 22
TMHMM 260 282 22
TMHMM 65 87 22

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran_2000_2002_QTL6_Delta.F Qrob_Chr03 3 s_2HYXJ2_207 s_1AUAXK_317 29.12 6,3 45,37 lod 3.1666 0.026
Bourran2_2014_nLBD_3P Qrob_Chr03 3 s_1ET7H8_604 s_1BYNB5_834 23,73 0 46,72 lod 1,7573 3,8
PM_1999_QTL14_peak_Bud_burst_3P Qrob_Chr03 3 s_2F0SI1_756 v_6056_735 11,78 3,78 50,78 lod 2,5 4,5
Bourran2_2014_rEpiBC*_3P Qrob_Chr03 3 s_1A3B3X_1163 s_1DKGMO_450 23,04 4,92 41,12 lod 2,5668 7

0 Targeting