Protein : Qrob_P0450990.2 Q. robur
Protein Identifier  ? Qrob_P0450990.2 Organism . Name  Quercus robur
Score  95.1 Score Type  egn
Protein Description  (M=6) PF12174 - RCD1-SRO-TAF4 (RST) plant domain Gene Prediction Quality  validated
Protein length 

Sequence

Length: 178  
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0003950 NAD+ ADP-ribosyltransferase activity Catalysis of the reaction: NAD+ + (ADP-D-ribosyl)(n)-acceptor = nicotinamide + (ADP-D-ribosyl)(n+1)-acceptor.

17 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103321769 2 171 + 170 Gaps:10 51.63 337 56.32 3e-58 probable inactive poly [ADP-ribose] polymerase SRO2
blastp_kegg lcl|mdm:103455219 16 171 + 156 Gaps:1 43.01 365 54.78 5e-56 probable inactive poly [ADP-ribose] polymerase SRO5
blastp_kegg lcl|pxb:103953026 14 175 + 162 Gaps:1 44.66 365 53.99 5e-56 probable inactive poly [ADP-ribose] polymerase SRO5
blastp_kegg lcl|mdm:103437716 16 174 + 159 Gaps:1 44.08 363 55.00 1e-55 probable inactive poly [ADP-ribose] polymerase SRO5
blastp_kegg lcl|pper:PRUPE_ppa007712mg 10 165 + 156 Gaps:1 43.85 358 55.41 2e-54 hypothetical protein
blastp_kegg lcl|vvi:100852765 12 165 + 154 none 47.38 325 55.19 2e-53 probable inactive poly [ADP-ribose] polymerase SRO2-like
blastp_kegg lcl|pmum:103338346 9 174 + 166 Gaps:1 43.15 387 51.50 3e-53 probable inactive poly [ADP-ribose] polymerase SRO5
blastp_kegg lcl|vvi:100265712 17 165 + 149 Gaps:1 48.39 310 55.33 4e-52 probable inactive poly [ADP-ribose] polymerase SRO2-like
blastp_kegg lcl|mdm:103403016 7 168 + 162 Gaps:7 50.60 334 54.44 4e-52 probable inactive poly [ADP-ribose] polymerase SRO2
blastp_kegg lcl|mdm:103451973 7 168 + 162 Gaps:11 50.60 334 53.25 1e-51 probable inactive poly [ADP-ribose] polymerase SRO2
blastp_uniprot_sprot sp|O64592|SRO3_ARATH 7 163 + 157 Gaps:6 49.51 305 47.68 2e-43 Probable inactive poly [ADP-ribose] polymerase SRO3 OS Arabidopsis thaliana GN SRO3 PE 1 SV 2
blastp_uniprot_sprot sp|Q9ZUD9|SRO2_ARATH 4 165 + 162 Gaps:4 48.92 323 44.30 2e-42 Probable inactive poly [ADP-ribose] polymerase SRO2 OS Arabidopsis thaliana GN SRO2 PE 1 SV 1
blastp_uniprot_sprot sp|Q9STU1|SRO4_ARATH 14 171 + 158 Gaps:8 47.47 316 43.33 8e-36 Probable inactive poly [ADP-ribose] polymerase SRO4 OS Arabidopsis thaliana GN SRO4 PE 2 SV 2
blastp_uniprot_sprot sp|Q9FJJ3|SRO5_ARATH 14 163 + 150 Gaps:5 46.93 309 42.07 5e-34 Probable inactive poly [ADP-ribose] polymerase SRO5 OS Arabidopsis thaliana GN SRO5 PE 1 SV 1
blastp_uniprot_sprot sp|Q8RY59|RCD1_ARATH 9 158 + 150 Gaps:37 31.75 589 34.22 1e-30 Inactive poly [ADP-ribose] polymerase RCD1 OS Arabidopsis thaliana GN RCD1 PE 1 SV 1
blastp_uniprot_sprot sp|O82289|SRO1_ARATH 9 159 + 151 Gaps:39 33.45 568 30.00 6e-24 Probable inactive poly [ADP-ribose] polymerase SRO1 OS Arabidopsis thaliana GN SRO1 PE 1 SV 2
rpsblast_cdd gnl|CDD|204843 101 163 + 63 none 90.00 70 39.68 3e-10 pfam12174 RST RCD1-SRO-TAF4 (RST) plant domain. This domain is found in plant RCD1 SRO and TAF4 proteins hence its name of RST. It is required for interaction with multiple plant transcription factors. Radical-Induced Cell Death1 (RCD1) is an important regulator of stress and hormonal and developmental responses in Arabidopsis thaliana as is its closest homologue SRO1 - Similar To RCD-One1. TBP-Associated Factor 4 (TAF4) and TAF4-b are components of the transcription initiation factor complex TFIID.

5 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 6 177 172 PTHR32263 none none none
Gene3D 16 86 71 G3DSA:3.90.228.10 none none IPR012317
Pfam 101 167 67 PF12174 none RCD1-SRO-TAF4 (RST) plant domain IPR022003
ProSiteProfiles 1 106 106 PS51059 none PARP catalytic domain profile. IPR012317
SUPERFAMILY 14 88 75 SSF56399 none none none

0 Localization

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9

0 Targeting