Protein : Qrob_P0448970.2 Q. robur
Protein Identifier  ? Qrob_P0448970.2 Organism . Name  Quercus robur
Protein Description  (M=20) PF01357//PF03330 - Pollen allergen // Rare lipoprotein A (RlpA)-like double-psi beta-barrel Alias (in v1)  Qrob_P0054330.1
Gene Prediction Quality  manual_v1 Protein length 

Sequence

Length: 260  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0005576 extracellular region The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
GO:0009664 plant-type cell wall organization A process that results in the assembly and arrangement of constituent parts of the cellulose and pectin-containing cell wall, or in the disassembly of the cellulose and pectin-containing cell wall. This process is carried out at the cellular level. An example of this process is found in Arabidopsis thaliana.

29 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pxb:103938614 1 259 + 259 Gaps:10 100.00 255 83.53 1e-148 expansin-A4-like
blastp_kegg lcl|tcc:TCM_042282 11 259 + 249 none 98.03 254 80.32 2e-148 Expansin A8 ALPHA 1.11 EXPA8
blastp_kegg lcl|mdm:103427642 1 259 + 259 Gaps:10 100.00 255 83.92 2e-148 expansin-A4-like
blastp_kegg lcl|mdm:103433747 1 259 + 259 Gaps:10 100.00 255 83.92 3e-148 expansin-A4-like
blastp_kegg lcl|cic:CICLE_v10013804mg 27 259 + 233 none 91.02 256 84.98 1e-147 hypothetical protein
blastp_kegg lcl|cit:102624130 27 259 + 233 none 91.02 256 84.98 1e-147 expansin-A8-like
blastp_kegg lcl|fve:101298233 1 259 + 259 Gaps:5 100.00 254 81.10 3e-146 expansin-A2-like
blastp_kegg lcl|cic:CICLE_v10032524mg 1 259 + 259 Gaps:5 100.00 254 79.13 3e-146 hypothetical protein
blastp_kegg lcl|pop:POPTR_0016s14260g 1 259 + 259 Gaps:5 100.00 254 79.92 1e-145 POPTRDRAFT_577163 expansin S1 precursor family protein
blastp_kegg lcl|pop:POPTR_0006s10850g 1 259 + 259 Gaps:7 100.00 254 80.31 2e-145 POPTRDRAFT_653202 hypothetical protein
blastp_pdb 2hcz_X 35 249 + 215 Gaps:34 88.57 245 32.72 9e-24 mol:protein length:245 Beta-expansin 1a
blastp_pdb 1n10_B 37 255 + 219 Gaps:30 91.70 241 30.77 4e-20 mol:protein length:241 Pollen allergen Phl p 1
blastp_pdb 1n10_A 37 255 + 219 Gaps:30 91.70 241 30.77 4e-20 mol:protein length:241 Pollen allergen Phl p 1
blastp_uniprot_sprot sp|O22874|EXPA8_ARATH 19 259 + 241 Gaps:7 93.28 253 80.51 6e-138 Expansin-A8 OS Arabidopsis thaliana GN EXPA8 PE 2 SV 1
blastp_uniprot_sprot sp|Q38866|EXPA2_ARATH 11 259 + 249 Gaps:6 96.08 255 75.51 4e-135 Expansin-A2 OS Arabidopsis thaliana GN EXPA2 PE 2 SV 2
blastp_uniprot_sprot sp|Q0DHB7|EXPA4_ORYSJ 16 259 + 244 Gaps:4 97.56 246 77.50 2e-133 Expansin-A4 OS Oryza sativa subsp. japonica GN EXPA4 PE 2 SV 1
blastp_uniprot_sprot sp|A2Y5R6|EXPA4_ORYSI 16 259 + 244 Gaps:4 97.56 246 77.50 2e-133 Expansin-A4 OS Oryza sativa subsp. indica GN EXPA4 PE 2 SV 1
blastp_uniprot_sprot sp|Q40636|EXPA2_ORYSJ 14 259 + 246 Gaps:3 96.81 251 75.72 4e-133 Expansin-A2 OS Oryza sativa subsp. japonica GN EXPA2 PE 2 SV 2
blastp_uniprot_sprot sp|Q9C554|EXPA1_ARATH 6 259 + 254 Gaps:5 99.60 250 73.49 3e-132 Expansin-A1 OS Arabidopsis thaliana GN EXPA1 PE 2 SV 1
blastp_uniprot_sprot sp|O80622|EXP15_ARATH 12 259 + 248 Gaps:6 95.65 253 73.97 5e-130 Expansin-A15 OS Arabidopsis thaliana GN EXPA15 PE 2 SV 2
blastp_uniprot_sprot sp|Q9LDR9|EXP10_ARATH 35 259 + 225 none 90.36 249 81.33 2e-127 Expansin-A10 OS Arabidopsis thaliana GN EXPA10 PE 2 SV 1
blastp_uniprot_sprot sp|O48818|EXPA4_ARATH 4 259 + 256 Gaps:7 99.22 257 69.80 2e-123 Expansin-A4 OS Arabidopsis thaliana GN EXPA4 PE 1 SV 1
blastp_uniprot_sprot sp|Q9FMA0|EXP14_ARATH 36 259 + 224 none 87.84 255 73.66 3e-122 Expansin-A14 OS Arabidopsis thaliana GN EXPA14 PE 2 SV 1
rpsblast_cdd gnl|CDD|165628 36 259 + 224 none 90.69 247 75.45 1e-102 PLN00050 PLN00050 expansin A Provisional.
rpsblast_cdd gnl|CDD|177787 36 258 + 223 Gaps:3 88.28 256 69.47 1e-99 PLN00193 PLN00193 expansin-A Provisional.
rpsblast_cdd gnl|CDD|129070 72 157 + 86 Gaps:1 100.00 87 75.86 3e-42 smart00837 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi beta-barrel. Rare lipoprotein A (RlpA) contains a conserved region that has the double-psi beta-barrel (DPBB) fold. The function of RlpA is not well understood but it has been shown to act as a prc mutant suppressor in Escherichia coli. The DPBB fold is often an enzymatic domain. The members of this family are quite diverse and if catalytic this family may contain several different functions. Another example of this domain is found in the N terminus of pollen allergen.
rpsblast_cdd gnl|CDD|201746 168 245 + 78 Gaps:4 100.00 82 54.88 4e-30 pfam01357 Pollen_allerg_1 Pollen allergen. This family contains allergens lol PI PII and PIII from Lolium perenne.
rpsblast_cdd gnl|CDD|202595 72 157 + 86 Gaps:17 100.00 77 48.05 1e-20 pfam03330 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi beta-barrel. Rare lipoprotein A (RlpA) contains a conserved region that has the double-psi beta-barrel (DPBB) fold. The function of RlpA is not well understood but it has been shown to act as a prc mutant suppressor in Escherichia coli. The DPBB fold is often an enzymatic domain. The members of this family are quite diverse and if catalytic this family may contain several different functions. Another example of this domain is found in the N terminus of pollen allergen.
rpsblast_cdd gnl|CDD|178594 42 255 + 214 Gaps:34 85.83 247 31.13 7e-18 PLN03023 PLN03023 Expansin-like B1 Provisional.

30 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 1 29 29 SIGNAL_PEPTIDE none Signal peptide region none
PANTHER 2 259 258 PTHR31867 none none none
Phobius 11 21 11 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
ProSiteProfiles 55 167 113 PS50842 none Expansin, family-45 endoglucanase-like domain profile. IPR007112
SUPERFAMILY 14 185 172 SSF50685 none none IPR009009
PRINTS 76 94 19 PR01225 none Expansin/Lol pI family signature IPR007118
PRINTS 150 166 17 PR01225 none Expansin/Lol pI family signature IPR007118
PRINTS 54 72 19 PR01225 none Expansin/Lol pI family signature IPR007118
PRINTS 242 256 15 PR01225 none Expansin/Lol pI family signature IPR007118
PRINTS 36 51 16 PR01225 none Expansin/Lol pI family signature IPR007118
PRINTS 204 218 15 PR01225 none Expansin/Lol pI family signature IPR007118
ProSiteProfiles 177 256 80 PS50843 none Expansin, Cellulose-binding-like domain profile. IPR007117
SMART 72 157 86 SM00837 none Rare lipoprotein A (RlpA)-like double-psi beta-barrel IPR007112
Gene3D 34 161 128 G3DSA:2.40.40.10 none none IPR014733
Pfam 72 156 85 PF03330 none Rare lipoprotein A (RlpA)-like double-psi beta-barrel IPR009009
Phobius 1 10 10 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
SUPERFAMILY 164 256 93 SSF49590 none none IPR007117
Phobius 30 259 230 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Pfam 168 245 78 PF01357 none Pollen allergen IPR007117
PRINTS 166 178 13 PR01226 none Expansin signature IPR002963
PRINTS 67 81 15 PR01226 none Expansin signature IPR002963
PRINTS 94 105 12 PR01226 none Expansin signature IPR002963
PRINTS 178 199 22 PR01226 none Expansin signature IPR002963
PRINTS 125 142 18 PR01226 none Expansin signature IPR002963
PRINTS 142 155 14 PR01226 none Expansin signature IPR002963
PRINTS 213 234 22 PR01226 none Expansin signature IPR002963
PRINTS 106 116 11 PR01226 none Expansin signature IPR002963
PRINTS 242 258 17 PR01226 none Expansin signature IPR002963
Gene3D 162 257 96 G3DSA:2.60.40.760 none none IPR007117
Phobius 22 29 8 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none

1 Localization

Analysis Start End Length
SignalP_EUK 1 26 25

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5

0 Targeting