Protein : Qrob_P0441770.2 Q. robur
Protein Identifier  ? Qrob_P0441770.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=4) PTHR22951//PTHR22951:SF13 - CLATHRIN ASSEMBLY PROTEIN // SUBFAMILY NOT NAMED (PTHR22951:SF13) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 187  
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0005543 phospholipid binding Interacting selectively and non-covalently with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester.

24 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_036987 1 99 + 99 none 14.71 673 92.93 7e-55 Epsin N-terminal domain-containing protein / clathrin assembly protein-related isoform 1
blastp_kegg lcl|csv:101227714 1 99 + 99 none 15.16 653 90.91 5e-53 putative clathrin assembly protein At2g25430-like
blastp_kegg lcl|csv:101207892 1 99 + 99 none 15.16 653 90.91 6e-53 putative clathrin assembly protein At2g25430-like
blastp_kegg lcl|cmo:103503830 1 99 + 99 none 15.16 653 90.91 7e-53 putative clathrin assembly protein At2g25430
blastp_kegg lcl|rcu:RCOM_0923910 1 103 + 103 none 15.56 662 87.38 1e-52 clathrin assembly protein putative (EC:1.3.1.74)
blastp_kegg lcl|fve:101309607 1 99 + 99 none 14.86 666 87.88 7e-52 putative clathrin assembly protein At2g25430-like
blastp_kegg lcl|cam:101498507 1 103 + 103 none 16.02 643 86.41 4e-51 putative clathrin assembly protein At2g25430-like
blastp_kegg lcl|cic:CICLE_v10007706mg 1 99 + 99 none 15.35 645 85.86 5e-51 hypothetical protein
blastp_kegg lcl|cit:102624234 1 99 + 99 none 15.35 645 85.86 5e-51 putative clathrin assembly protein At2g25430-like
blastp_kegg lcl|pop:POPTR_0018s01790g 1 99 + 99 none 14.75 671 86.87 5e-51 POPTRDRAFT_835815 clathrin assembly family protein
blastp_uniprot_sprot sp|Q8LF20|CAP2_ARATH 1 99 + 99 Gaps:1 15.01 653 86.73 9e-50 Putative clathrin assembly protein At2g25430 OS Arabidopsis thaliana GN At2g25430 PE 1 SV 2
blastp_uniprot_sprot sp|Q8S9J8|CAP1_ARATH 5 99 + 95 none 14.96 635 83.16 3e-46 Probable clathrin assembly protein At4g32285 OS Arabidopsis thaliana GN At4g32285 PE 1 SV 2
blastp_uniprot_sprot sp|Q8GX47|CAP3_ARATH 1 99 + 99 Gaps:2 16.53 611 62.38 2e-33 Putative clathrin assembly protein At4g02650 OS Arabidopsis thaliana GN At4g02650 PE 2 SV 2
blastp_uniprot_sprot sp|Q9SA65|CAP4_ARATH 1 99 + 99 Gaps:2 16.86 599 63.37 3e-33 Putative clathrin assembly protein At1g03050 OS Arabidopsis thaliana GN At1g03050 PE 2 SV 1
blastp_uniprot_sprot sp|Q9ZVN6|AP180_ARATH 3 99 + 97 Gaps:6 15.77 653 49.51 4e-24 Clathrin coat assembly protein AP180 OS Arabidopsis thaliana GN AP180 PE 1 SV 1
blastp_uniprot_sprot sp|Q9LVD8|CAP7_ARATH 4 99 + 96 Gaps:3 16.41 591 51.55 6e-23 Putative clathrin assembly protein At5g57200 OS Arabidopsis thaliana GN At5g57200 PE 3 SV 1
blastp_uniprot_sprot sp|Q8LBH2|CAP8_ARATH 7 99 + 93 Gaps:3 16.46 571 53.19 9e-22 Putative clathrin assembly protein At2g01600 OS Arabidopsis thaliana GN At2g01600 PE 2 SV 2
blastp_uniprot_sprot sp|Q8VYT2|CAP6_ARATH 4 99 + 96 Gaps:3 16.14 601 49.48 2e-21 Putative clathrin assembly protein At4g25940 OS Arabidopsis thaliana GN At4g25940 PE 2 SV 1
blastp_uniprot_sprot sp|P94017|CAP9_ARATH 7 99 + 93 Gaps:3 13.58 692 50.00 1e-19 Putative clathrin assembly protein At1g14910 OS Arabidopsis thaliana GN At1g14910 PE 2 SV 2
blastp_uniprot_sprot sp|Q9LHS0|CAP10_ARATH 6 99 + 94 Gaps:3 17.46 544 46.32 4e-18 Putative clathrin assembly protein At5g35200 OS Arabidopsis thaliana GN At5g35200 PE 1 SV 1
rpsblast_cdd gnl|CDD|203708 31 99 + 69 Gaps:1 24.46 278 61.76 2e-21 pfam07651 ANTH ANTH domain. AP180 is an endocytotic accessory proteins that has been implicated in the formation of clathrin-coated pits. The domain is involved in phosphatidylinositol 4 5-bisphosphate binding and is a universal adaptor for nucleation of clathrin coats.
rpsblast_cdd gnl|CDD|197619 30 99 + 70 none 55.12 127 35.71 2e-18 smart00273 ENTH Epsin N-terminal homology (ENTH) domain.
rpsblast_cdd gnl|CDD|48660 32 99 + 68 Gaps:1 57.26 117 52.24 2e-17 cd03564 ANTH_AP180_CALM ANTH domain family composed of adaptor protein 180 (AP180) clathrin assembly lymphoid myeloid leukemia protein (CALM) and similar proteins. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. AP180 and CALM play important roles in clathrin-mediated endocytosis. AP180 is a brain-specific clathrin-binding protein which stimulates clathrin assembly during the recycling of synaptic vesicles. The ANTH domain is structurally similar to the VHS domain and is composed of a superhelix of eight alpha helices. ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network which suggests that the ANTH domain is a universal component of the machinery for clathrin-mediated membrane budding..
rpsblast_kog gnl|CDD|35472 8 99 + 92 Gaps:1 18.53 491 62.64 4e-34 KOG0251 KOG0251 KOG0251 Clathrin assembly protein AP180 and related proteins contain ENTH domain [Signal transduction mechanisms Intracellular trafficking secretion and vesicular transport].

14 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 4 99 96 PTHR22951:SF13 none none none
Gene3D 30 99 70 G3DSA:1.25.40.90 none none IPR008942
SUPERFAMILY 31 104 74 SSF48464 none none IPR008942
Phobius 135 154 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1 102 102 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
SMART 30 153 124 SM00273 none Epsin N-terminal homology (ENTH) domain IPR013809
Phobius 103 123 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
ProSiteProfiles 24 186 163 PS50942 none ENTH domain profile. IPR013809
PANTHER 4 99 96 PTHR22951 none none none
Phobius 124 134 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 186 186 1 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 166 185 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 155 165 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Pfam 31 101 71 PF07651 none ANTH domain IPR011417

2 Localization

Analysis Start End Length
TMHMM 162 184 22
TMHMM 135 157 22

20 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2002_QTL7_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 29 52 lod 8,1 16
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nP_A4 Qrob_Chr02 2 s_1A0FUE_1868 s_1A1UAI_500 20,64 20,47 21,36 lod 5.8 10.9
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf Qrob_Chr02 2 s_1AEP21_172 v_6048_204 46.33 22,5 65,23 lod 4.972 0.03
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
Bourran1_2003_QTL1_peak_Bud_burst_3P Qrob_Chr02 2 s_1AR8KI_1183 s_1B0QB1_473 22 6 41 lod 4,2 11,5
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nEpis_A4 Qrob_Chr02 2 s_1BAGIZ_823 s_1BN4CB_644 23,06 23,06 23,06 lod 4.9 11
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7
Champenoux_2015_nSecLBD_A4 Qrob_Chr02 2 s_1AN4ZM_1665 v_8587_238 18,52 18,89 18,27 lod 3.2 7.4

0 Targeting