Protein : Qrob_P0440910.2 Q. robur
Protein Identifier  ? Qrob_P0440910.2 Organism . Name  Quercus robur
Score  91.0 Score Type  egn
Protein Description  (M=2) PTHR31867:SF4 - EXPANSIN-A11 (PTHR31867:SF4) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 289  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0005576 extracellular region The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
GO:0009664 plant-type cell wall organization A process that results in the assembly and arrangement of constituent parts of the cellulose and pectin-containing cell wall, or in the disassembly of the cellulose and pectin-containing cell wall. This process is carried out at the cellular level. An example of this process is found in Arabidopsis thaliana.

29 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_004979 1 288 + 288 Gaps:32 85.05 301 80.08 4e-146 Expansin A17 ALPHA 1.13 EXPA17 putative
blastp_kegg lcl|tcc:TCM_046987 1 288 + 288 Gaps:32 100.00 256 80.08 8e-146 Expansin A17 ALPHA 1.13 EXPA17
blastp_kegg lcl|vvi:100248670 1 288 + 288 Gaps:32 100.00 256 78.91 6e-145 putative expansin-A17-like
blastp_kegg lcl|pop:POPTR_0002s18550g 12 288 + 277 Gaps:33 96.06 254 84.43 2e-144 POPTRDRAFT_411151 hypothetical protein
blastp_kegg lcl|rcu:RCOM_1342060 1 288 + 288 Gaps:33 100.00 255 80.39 4e-144 Alpha-expansin 8 precursor putative
blastp_kegg lcl|rcu:RCOM_1342080 6 288 + 283 Gaps:33 98.04 255 80.80 2e-143 Alpha-expansin 1 precursor putative
blastp_kegg lcl|cam:101509282 1 288 + 288 Gaps:33 90.43 282 78.43 9e-143 putative expansin-A17-like
blastp_kegg lcl|gmx:100813434 1 288 + 288 Gaps:34 100.00 254 79.53 6e-142 putative expansin-A17-like
blastp_kegg lcl|gmx:100783801 1 288 + 288 Gaps:34 100.00 254 79.53 8e-142 putative expansin-A17-like
blastp_kegg lcl|pvu:PHAVU_007G207600g 1 288 + 288 Gaps:34 100.00 254 80.31 2e-141 hypothetical protein
blastp_pdb 2hcz_X 74 288 + 215 Gaps:34 86.12 245 35.55 5e-26 mol:protein length:245 Beta-expansin 1a
blastp_pdb 1n10_B 71 285 + 215 Gaps:34 87.55 241 32.23 1e-18 mol:protein length:241 Pollen allergen Phl p 1
blastp_pdb 1n10_A 71 285 + 215 Gaps:34 87.55 241 32.23 1e-18 mol:protein length:241 Pollen allergen Phl p 1
blastp_uniprot_sprot sp|Q9ZSI1|EXP17_ARATH 1 288 + 288 Gaps:33 100.00 255 74.51 2e-132 Putative expansin-A17 OS Arabidopsis thaliana GN EXPA17 PE 3 SV 1
blastp_uniprot_sprot sp|Q9XHX0|EXPA8_ORYSJ 26 288 + 263 Gaps:34 91.24 251 68.12 5e-107 Expansin-A8 OS Oryza sativa subsp. japonica GN EXPA8 PE 2 SV 1
blastp_uniprot_sprot sp|Q4PR39|EXP29_ORYSJ 7 288 + 282 Gaps:34 95.06 263 58.40 3e-105 Expansin-A29 OS Oryza sativa subsp. japonica GN EXPA29 PE 2 SV 2
blastp_uniprot_sprot sp|Q4PR44|EXP22_ORYSJ 29 288 + 260 Gaps:32 81.43 280 63.16 3e-104 Expansin-A22 OS Oryza sativa subsp. japonica GN EXPA22 PE 2 SV 2
blastp_uniprot_sprot sp|Q7XWU8|EXPA1_ORYSJ 8 288 + 281 Gaps:38 96.93 261 62.45 1e-103 Expansin-A1 OS Oryza sativa subsp. japonica GN EXPA1 PE 2 SV 2
blastp_uniprot_sprot sp|Q4PR42|EXP24_ORYSJ 29 288 + 260 Gaps:32 82.01 278 62.28 4e-103 Expansin-A24 OS Oryza sativa subsp. japonica GN EXPA24 PE 2 SV 2
blastp_uniprot_sprot sp|Q4PR43|EXP23_ORYSJ 29 288 + 260 Gaps:32 85.39 267 61.84 1e-102 Expansin-A23 OS Oryza sativa subsp. japonica GN EXPA23.1 PE 2 SV 2
blastp_uniprot_sprot sp|Q4PR52|EXP13_ORYSJ 27 288 + 262 Gaps:32 87.79 262 61.74 2e-102 Expansin-A13 OS Oryza sativa subsp. japonica GN EXPA13 PE 2 SV 2
blastp_uniprot_sprot sp|Q9LNU3|EXP11_ARATH 33 288 + 256 Gaps:33 88.49 252 65.47 4e-101 Expansin-A11 OS Arabidopsis thaliana GN EXPA11 PE 2 SV 1
blastp_uniprot_sprot sp|Q38866|EXPA2_ARATH 9 282 + 274 Gaps:40 95.69 255 61.48 8e-101 Expansin-A2 OS Arabidopsis thaliana GN EXPA2 PE 2 SV 2
rpsblast_cdd gnl|CDD|177787 4 288 + 285 Gaps:36 97.27 256 64.26 2e-97 PLN00193 PLN00193 expansin-A Provisional.
rpsblast_cdd gnl|CDD|165628 26 283 + 258 Gaps:36 89.88 247 70.27 8e-83 PLN00050 PLN00050 expansin A Provisional.
rpsblast_cdd gnl|CDD|129070 96 184 + 89 Gaps:2 100.00 87 72.41 1e-40 smart00837 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi beta-barrel. Rare lipoprotein A (RlpA) contains a conserved region that has the double-psi beta-barrel (DPBB) fold. The function of RlpA is not well understood but it has been shown to act as a prc mutant suppressor in Escherichia coli. The DPBB fold is often an enzymatic domain. The members of this family are quite diverse and if catalytic this family may contain several different functions. Another example of this domain is found in the N terminus of pollen allergen.
rpsblast_cdd gnl|CDD|201746 195 273 + 79 Gaps:3 100.00 82 54.88 3e-26 pfam01357 Pollen_allerg_1 Pollen allergen. This family contains allergens lol PI PII and PIII from Lolium perenne.
rpsblast_cdd gnl|CDD|202595 96 184 + 89 Gaps:14 100.00 77 50.65 2e-24 pfam03330 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi beta-barrel. Rare lipoprotein A (RlpA) contains a conserved region that has the double-psi beta-barrel (DPBB) fold. The function of RlpA is not well understood but it has been shown to act as a prc mutant suppressor in Escherichia coli. The DPBB fold is often an enzymatic domain. The members of this family are quite diverse and if catalytic this family may contain several different functions. Another example of this domain is found in the N terminus of pollen allergen.
rpsblast_cdd gnl|CDD|178594 80 287 + 208 Gaps:34 81.78 247 30.20 2e-16 PLN03023 PLN03023 Expansin-like B1 Provisional.

30 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 195 273 79 PF01357 none Pollen allergen IPR007117
ProSiteProfiles 79 194 116 PS50842 none Expansin, family-45 endoglucanase-like domain profile. IPR007112
Gene3D 79 188 110 G3DSA:2.40.40.10 none none IPR014733
Gene3D 16 46 31 G3DSA:2.40.40.10 none none IPR014733
Pfam 96 184 89 PF03330 none Rare lipoprotein A (RlpA)-like double-psi beta-barrel IPR009009
SUPERFAMILY 191 284 94 SSF49590 none none IPR007117
PANTHER 79 288 210 PTHR31867 none none none
PANTHER 1 46 46 PTHR31867 none none none
SUPERFAMILY 78 212 135 SSF50685 none none IPR009009
SMART 96 184 89 SM00837 none Rare lipoprotein A (RlpA)-like double-psi beta-barrel IPR007112
Phobius 27 288 262 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 1 5 5 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
Phobius 1 26 26 SIGNAL_PEPTIDE none Signal peptide region none
PRINTS 28 43 16 PR01225 none Expansin/Lol pI family signature IPR007118
PRINTS 270 284 15 PR01225 none Expansin/Lol pI family signature IPR007118
PANTHER 79 288 210 PTHR31867:SF4 none none none
PANTHER 1 46 46 PTHR31867:SF4 none none none
Phobius 6 17 12 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
Gene3D 189 288 100 G3DSA:2.60.40.760 none none IPR007117
ProSiteProfiles 204 284 81 PS50843 none Expansin, Cellulose-binding-like domain profile. IPR007117
PRINTS 205 226 22 PR01226 none Expansin signature IPR002963
PRINTS 152 169 18 PR01226 none Expansin signature IPR002963
PRINTS 169 182 14 PR01226 none Expansin signature IPR002963
PRINTS 241 262 22 PR01226 none Expansin signature IPR002963
PRINTS 193 205 13 PR01226 none Expansin signature IPR002963
PRINTS 270 286 17 PR01226 none Expansin signature IPR002963
PRINTS 120 131 12 PR01226 none Expansin signature IPR002963
PRINTS 91 105 15 PR01226 none Expansin signature IPR002963
PRINTS 133 143 11 PR01226 none Expansin signature IPR002963
Phobius 18 26 9 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none

2 Localization

Analysis Start End Length
SignalP_GRAM_POSITIVE 1 26 25
TMHMM 7 29 22

1 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4

0 Targeting