Protein : Qrob_P0439800.2 Q. robur
Protein Identifier  ? Qrob_P0439800.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) KOG4444 - Peroxisomal assembly protein PEX3 [Cell wall/membrane/envelope biogenesis Intracellular trafficking secretion and vesicular transport]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 138  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0005779 integral component of peroxisomal membrane The component of the peroxisomal membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
GO:0007031 peroxisome organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a peroxisome. A peroxisome is a small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules.

14 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_012593 1 120 + 120 Gaps:1 31.99 372 75.63 1e-56 Peroxin 3 isoform 1
blastp_kegg lcl|rcu:RCOM_0571710 4 120 + 117 none 31.37 373 75.21 2e-54 amino acid transporter putative
blastp_kegg lcl|vvi:100243874 4 120 + 117 none 31.37 373 74.36 3e-54 peroxisome biogenesis protein 3-2-like
blastp_kegg lcl|gmx:100782816 1 122 + 122 Gaps:2 32.52 369 74.17 7e-53 peroxisome biogenesis protein 3-2-like
blastp_kegg lcl|pvu:PHAVU_002G327400g 4 120 + 117 Gaps:1 31.44 369 73.28 6e-52 hypothetical protein
blastp_kegg lcl|gmx:100778748 1 122 + 122 Gaps:2 32.52 369 72.50 3e-51 peroxisome biogenesis protein 3-2-like
blastp_kegg lcl|pop:POPTR_0015s04240g 1 120 + 120 Gaps:1 31.82 374 70.59 6e-51 POPTRDRAFT_835101 phosphatase 2C family protein
blastp_kegg lcl|pop:POPTR_0012s04710g 1 120 + 120 Gaps:1 31.82 374 70.59 6e-51 POPTRDRAFT_728459 phosphatase 2C family protein
blastp_kegg lcl|cam:101505797 1 120 + 120 Gaps:1 32.43 367 71.43 8e-51 peroxisome biogenesis protein 3-2-like
blastp_kegg lcl|pxb:103939418 1 120 + 120 Gaps:5 31.79 368 74.36 8e-48 peroxisome biogenesis protein 3-2-like
blastp_uniprot_sprot sp|Q8LDG7|PEX31_ARATH 5 120 + 116 Gaps:3 31.56 358 61.95 2e-43 Peroxisome biogenesis protein 3-1 OS Arabidopsis thaliana GN PEX3-1 PE 2 SV 2
blastp_uniprot_sprot sp|Q8S9K7|PEX32_ARATH 5 120 + 116 Gaps:3 31.04 364 59.29 2e-40 Peroxisome biogenesis protein 3-2 OS Arabidopsis thaliana GN PEX3-2 PE 2 SV 1
rpsblast_cdd gnl|CDD|203111 2 112 + 111 Gaps:8 25.81 399 42.72 1e-22 pfam04882 Peroxin-3 Peroxin-3. Peroxin-3 is a peroxisomal protein. It is thought to be involve in membrane vesicle assembly prior to the translocation of matrix proteins.
rpsblast_kog gnl|CDD|39645 1 120 + 120 Gaps:12 30.08 359 40.74 2e-19 KOG4444 KOG4444 KOG4444 Peroxisomal assembly protein PEX3 [Cell wall/membrane/envelope biogenesis Intracellular trafficking secretion and vesicular transport].

6 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 3 115 113 PF04882 none Peroxin-3 IPR006966
Phobius 16 33 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Coils 87 108 22 Coil none none none
Phobius 1 15 15 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 34 137 104 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Coils 33 61 29 Coil none none none

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL5_peak_Bud_burst_A4 Qrob_Chr10 10 s_1C8OKQ_688 v_12844_707 25,6 13,9 39,9 lod 2,7 6,1
Bourran2_2002_QTL13_peak_Bud_burst_3P Qrob_Chr10 10 s_1B1AG7_637 s_1A3A1N_709 19,44 0 49,44 lod 3 5,6
Bourran2_2002_QTL15_peak_Bud_burst_A4 Qrob_Chr10 10 v_7579_71 s_1ATZMJ_189 23,94 0 43,64 lod 3,7 5,4
Bourran2_2014_vSeqBC_A4 Qrob_Chr10 10 s_1BAM4E_1326 s_1C0HD0_1012 36,88 7,71 46,03 lod 2,6164 7,3
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5

0 Targeting