Protein : Qrob_P0437930.2 Q. robur
Protein Identifier  ? Qrob_P0437930.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) PTHR23079//PTHR23079:SF12 - RNA-DEPENDENT RNA POLYMERASE // SUBFAMILY NOT NAMED Code Enzyme  EC:2.7.7.48
Gene Prediction Quality  validated Protein length 

Sequence

Length: 1205  
Kegg Orthology  K11699
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0003968 RNA-directed RNA polymerase activity Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1); uses an RNA template.

25 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0018s01670g 1 1204 + 1204 Gaps:10 100.00 1200 76.00 0.0 POPTRDRAFT_779035 SILENCING DEFECTIVE 1 family protein
blastp_kegg lcl|pop:POPTR_0006s26980g 1 1204 + 1204 Gaps:8 100.00 1198 76.13 0.0 POPTRDRAFT_561891 SILENCING DEFECTIVE 1 family protein
blastp_kegg lcl|tcc:TCM_037008 1 1204 + 1204 Gaps:7 100.00 1197 75.27 0.0 RNA-dependent RNA polymerase 6
blastp_kegg lcl|pper:PRUPE_ppa000422mg 1 1204 + 1204 Gaps:10 100.00 1196 76.51 0.0 hypothetical protein
blastp_kegg lcl|pmum:103319696 1 1204 + 1204 Gaps:10 100.00 1196 76.59 0.0 RNA-dependent RNA polymerase 6
blastp_kegg lcl|fve:101311644 1 1204 + 1204 Gaps:7 100.00 1197 75.36 0.0 RNA-dependent RNA polymerase 6-like
blastp_kegg lcl|rcu:RCOM_0924060 1 1204 + 1204 Gaps:13 100.00 1203 75.39 0.0 RNA-dependent RNA polymerase putative
blastp_kegg lcl|pxb:103946696 1 1204 + 1204 Gaps:7 100.00 1197 73.93 0.0 RNA-dependent RNA polymerase 6
blastp_kegg lcl|mdm:103456206 1 1204 + 1204 Gaps:7 100.00 1197 73.93 0.0 RNA-dependent RNA polymerase 6
blastp_kegg lcl|cit:102619723 1 1204 + 1204 Gaps:9 100.00 1197 74.44 0.0 RNA-dependent RNA polymerase 6-like
blastp_pdb 2j7o_A 531 932 + 402 Gaps:68 41.29 1022 22.27 3e-13 mol:protein length:1022 RNA DEPENDENT RNA POLYMERASE
blastp_pdb 2j7n_B 531 932 + 402 Gaps:68 41.29 1022 22.27 3e-13 mol:protein length:1022 RNA-DEPENDENT RNA POLYMERASE
blastp_pdb 2j7n_A 531 932 + 402 Gaps:68 41.29 1022 22.27 3e-13 mol:protein length:1022 RNA-DEPENDENT RNA POLYMERASE
blastp_uniprot_sprot sp|Q9SG02|RDR6_ARATH 1 1204 + 1204 Gaps:10 100.00 1196 68.81 0.0 RNA-dependent RNA polymerase 6 OS Arabidopsis thaliana GN RDR6 PE 1 SV 1
blastp_uniprot_sprot sp|Q8LHH9|SHL2_ORYSJ 9 1204 + 1196 Gaps:21 97.95 1218 59.85 0.0 Probable RNA-dependent RNA polymerase SHL2 OS Oryza sativa subsp. japonica GN SHL2 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LQV2|RDR1_ARATH 195 1178 + 984 Gaps:84 85.09 1107 39.92 0.0 RNA-dependent RNA polymerase 1 OS Arabidopsis thaliana GN RDR1 PE 2 SV 1
blastp_uniprot_sprot sp|Q0DXS3|RDR1_ORYSJ 422 1180 + 759 Gaps:58 96.62 740 45.31 6e-180 Probable RNA-dependent RNA polymerase 1 OS Oryza sativa subsp. japonica GN RDR1 PE 2 SV 2
blastp_uniprot_sprot sp|Q7XM31|RDR2_ORYSJ 196 1181 + 986 Gaps:76 84.51 1136 37.29 2e-178 Probable RNA-dependent RNA polymerase 2 OS Oryza sativa subsp. japonica GN RDR2 PE 2 SV 1
blastp_uniprot_sprot sp|O82504|RDR2_ARATH 220 1188 + 969 Gaps:84 83.23 1133 38.18 9e-173 RNA-dependent RNA polymerase 2 OS Arabidopsis thaliana GN RDR2 PE 1 SV 1
blastp_uniprot_sprot sp|O14227|RDR1_SCHPO 262 1136 + 875 Gaps:93 70.95 1215 31.79 1e-97 RNA-dependent RNA polymerase 1 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN rdr1 PE 1 SV 1
blastp_uniprot_sprot sp|O82188|RDR5_ARATH 668 1019 + 352 Gaps:47 35.72 977 26.93 2e-22 Probable RNA-dependent RNA polymerase 5 OS Arabidopsis thaliana GN RDR5 PE 2 SV 2
blastp_uniprot_sprot sp|O82190|RDR3_ARATH 668 1016 + 349 Gaps:50 34.78 992 26.38 4e-19 Probable RNA-dependent RNA polymerase 3 OS Arabidopsis thaliana GN RDR3 PE 3 SV 2
blastp_uniprot_sprot sp|Q5QMN5|RDR3_ORYSJ 644 1003 + 360 Gaps:46 30.88 1153 26.40 3e-18 Probable RNA-dependent RNA polymerase 3 OS Oryza sativa subsp. japonica GN RDR3 PE 2 SV 2
rpsblast_cdd gnl|CDD|203192 422 1010 + 589 Gaps:96 99.80 508 46.15 1e-136 pfam05183 RdRP RNA dependent RNA polymerase. This family of proteins are eukaryotic RNA dependent RNA polymerases. These proteins are involved in post transcriptional gene silencing where they are thought to amplify dsRNA templates.
rpsblast_kog gnl|CDD|36206 3 1203 + 1201 Gaps:107 99.74 1145 33.89 0.0 KOG0988 KOG0988 KOG0988 RNA-directed RNA polymerase QDE-1 required for posttranscriptional gene silencing and RNA interference [RNA processing and modification].

5 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 1 299 299 PTHR23079:SF12 none none none
PANTHER 1 299 299 PTHR23079 none none IPR007855
PANTHER 319 1183 865 PTHR23079 none none IPR007855
Pfam 423 1008 586 PF05183 none RNA dependent RNA polymerase IPR007855
PANTHER 319 1183 865 PTHR23079:SF12 none none none

0 Localization

19 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2002_QTL7_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 29 52 lod 8,1 16
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nP_A4 Qrob_Chr02 2 s_1A0FUE_1868 s_1A1UAI_500 20,64 20,47 21,36 lod 5.8 10.9
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf Qrob_Chr02 2 s_1AEP21_172 v_6048_204 46.33 22,5 65,23 lod 4.972 0.03
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
Bourran1_2003_QTL1_peak_Bud_burst_3P Qrob_Chr02 2 s_1AR8KI_1183 s_1B0QB1_473 22 6 41 lod 4,2 11,5
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nEpis_A4 Qrob_Chr02 2 s_1BAGIZ_823 s_1BN4CB_644 23,06 23,06 23,06 lod 4.9 11
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7

0 Targeting