Protein : Qrob_P0436200.2 Q. robur
Protein Identifier  ? Qrob_P0436200.2 Organism . Name  Quercus robur
Score  67.0 Score Type  egn
Protein Description  (M=1) PTHR12585:SF26 - SISTER CHROMATID COHESION 1 PROTEIN 1 (PTHR12585:SF26) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 356  
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0000228 nuclear chromosome A chromosome found in the nucleus of a eukaryotic cell.

13 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|rcu:RCOM_0687180 121 352 + 232 Gaps:3 38.01 613 71.67 1e-107 cohesin subunit rad21 putative
blastp_kegg lcl|pop:POPTR_0008s07230g 20 355 + 336 Gaps:9 56.93 606 60.87 3e-93 POPTRDRAFT_765611 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10031002mg 124 355 + 232 Gaps:5 39.30 603 68.78 6e-91 hypothetical protein
blastp_kegg lcl|cit:102617117 124 355 + 232 Gaps:5 37.86 626 68.78 1e-90 sister chromatid cohesion 1 protein 1-like
blastp_kegg lcl|sly:101260737 104 355 + 252 Gaps:15 41.56 628 58.62 3e-89 sister chromatid cohesion 1 protein 1-like
blastp_kegg lcl|cmo:103495180 103 355 + 253 Gaps:14 41.40 616 63.14 3e-87 sister chromatid cohesion 1 protein 1
blastp_kegg lcl|sot:102581963 131 355 + 225 Gaps:12 33.86 700 61.18 1e-85 sister chromatid cohesion 1 protein 1-like
blastp_kegg lcl|vvi:100262148 121 355 + 235 Gaps:17 38.82 608 66.53 2e-83 sister chromatid cohesion 1 protein 1-like
blastp_kegg lcl|pper:PRUPE_ppa022203mg 98 355 + 258 Gaps:6 44.18 584 56.98 3e-83 hypothetical protein
blastp_kegg lcl|csv:101206467 103 355 + 253 Gaps:23 41.77 589 63.82 7e-75 sister chromatid cohesion 1 protein 1-like
blastp_uniprot_sprot sp|Q9S7T7|SCC11_ARATH 45 355 + 311 Gaps:30 50.24 627 39.68 2e-47 Sister chromatid cohesion 1 protein 1 OS Arabidopsis thaliana GN SYN1 PE 2 SV 2
rpsblast_cdd gnl|CDD|113590 301 352 + 52 none 94.55 55 44.23 3e-13 pfam04824 Rad21_Rec8 Conserved region of Rad21 / Rec8 like protein. This family represents a conserved region found in eukaryotic cohesins of the Rad21 Rec8 and Scc1 families. Members of this family mediate sister chromatid cohesion during mitosis and meiosis as part of the cohesin complex. Cohesion is necessary for homologous recombination (including double-strand break repair) and correct chromatid segregation. These proteins may also be involved in chromosome condensation. Dissociation at the metaphase to anaphase transition causes loss of cohesion and chromatid segregation.
rpsblast_kog gnl|CDD|36427 148 352 + 205 Gaps:8 32.08 614 21.83 2e-12 KOG1213 KOG1213 KOG1213 Sister chromatid cohesion complex Cohesin subunit RAD21/SCC1 [Cell cycle control cell division chromosome partitioning].

5 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 166 355 190 PTHR12585:SF26 none none none
SUPERFAMILY 289 354 66 SSF46785 none none none
Gene3D 292 352 61 G3DSA:1.10.10.580 none none IPR023093
PANTHER 166 355 190 PTHR12585 none none none
Pfam 302 353 52 PF04824 none Conserved region of Rad21 / Rec8 like protein IPR006909

0 Localization

14 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran_2000_2002_QTL3_Delta.F Qrob_Chr08 8 s_1A3EF7_1406 s_1AIWYC_607 30.17 21,01 40,21 lod 6.8553 0.055
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nPriLBD_A4 Qrob_Chr08 8 PIE175 v_9164_159 31,85 15,39 48,29 lod 2,8308 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04

0 Targeting