Protein : Qrob_P0436000.2 Q. robur
Protein Identifier  ? Qrob_P0436000.2 Organism . Name  Quercus robur
Score  98.0 Score Type  egn
Protein Description  (M=2) K04646 - clathrin heavy chain Gene Prediction Quality  validated
Protein length 

Sequence

Length: 1621  
Kegg Orthology  K04646
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0 Synonyms

7 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0005488 binding The selective, non-covalent, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule.
GO:0006886 intracellular protein transport The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
GO:0016192 vesicle-mediated transport A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane.
GO:0005198 structural molecule activity The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell.
GO:0030130 clathrin coat of trans-Golgi network vesicle A clathrin coat found on a vesicle of the trans-Golgi network.
GO:0030132 clathrin coat of coated pit The coat found on coated pits and the coated vesicles derived from coated pits; comprises clathrin and the AP-2 adaptor complex.

34 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103332801 1 1619 + 1619 none 95.18 1701 95.68 0.0 clathrin heavy chain 1
blastp_kegg lcl|pper:PRUPE_ppa000130mg 1 1619 + 1619 none 95.18 1701 95.68 0.0 hypothetical protein
blastp_kegg lcl|mdm:103437458 1 1619 + 1619 none 94.96 1705 95.61 0.0 clathrin heavy chain 1
blastp_kegg lcl|pxb:103936935 1 1619 + 1619 none 94.96 1705 95.61 0.0 clathrin heavy chain 1
blastp_kegg lcl|gmx:100802224 1 1619 + 1619 none 95.24 1700 95.43 0.0 clathrin heavy chain 1-like
blastp_kegg lcl|pxb:103958623 1 1619 + 1619 none 94.96 1705 95.43 0.0 clathrin heavy chain 2-like
blastp_kegg lcl|cic:CICLE_v10030488mg 1 1619 + 1619 none 95.18 1701 95.31 0.0 hypothetical protein
blastp_kegg lcl|cit:102624350 1 1619 + 1619 none 95.18 1701 95.31 0.0 clathrin heavy chain 1-like
blastp_kegg lcl|tcc:TCM_042478 1 1619 + 1619 none 94.96 1705 95.18 0.0 Clathrin heavy chain isoform 1
blastp_kegg lcl|pvu:PHAVU_001G244300g 1 1619 + 1619 none 95.18 1701 95.06 0.0 hypothetical protein
blastp_pdb 3iyv_I 7 1619 + 1613 Gaps:17 98.16 1630 58.06 0.0 mol:protein length:1630 Clathrin heavy chain
blastp_pdb 3iyv_H 7 1619 + 1613 Gaps:17 98.16 1630 58.06 0.0 mol:protein length:1630 Clathrin heavy chain
blastp_pdb 3iyv_G 7 1619 + 1613 Gaps:17 98.16 1630 58.06 0.0 mol:protein length:1630 Clathrin heavy chain
blastp_pdb 3iyv_F 7 1619 + 1613 Gaps:17 98.16 1630 58.06 0.0 mol:protein length:1630 Clathrin heavy chain
blastp_pdb 3iyv_E 7 1619 + 1613 Gaps:17 98.16 1630 58.06 0.0 mol:protein length:1630 Clathrin heavy chain
blastp_pdb 3iyv_D 7 1619 + 1613 Gaps:17 98.16 1630 58.06 0.0 mol:protein length:1630 Clathrin heavy chain
blastp_pdb 3iyv_C 7 1619 + 1613 Gaps:17 98.16 1630 58.06 0.0 mol:protein length:1630 Clathrin heavy chain
blastp_pdb 3iyv_B 7 1619 + 1613 Gaps:17 98.16 1630 58.06 0.0 mol:protein length:1630 Clathrin heavy chain
blastp_pdb 3iyv_A 7 1619 + 1613 Gaps:17 98.16 1630 58.06 0.0 mol:protein length:1630 Clathrin heavy chain
blastp_pdb 1xi5_I 7 1619 + 1613 Gaps:17 98.16 1630 58.06 0.0 mol:protein length:1630 Clathrin heavy chain
blastp_uniprot_sprot sp|Q0WNJ6|CLAH1_ARATH 1 1619 + 1619 none 94.96 1705 93.02 0.0 Clathrin heavy chain 1 OS Arabidopsis thaliana GN CHC1 PE 1 SV 1
blastp_uniprot_sprot sp|Q2QYW2|CLH2_ORYSJ 1 1619 + 1619 none 94.79 1708 92.77 0.0 Clathrin heavy chain 2 OS Oryza sativa subsp. japonica GN Os12g0104800 PE 3 SV 1
blastp_uniprot_sprot sp|Q2RBN7|CLH1_ORYSJ 1 1619 + 1619 none 94.79 1708 92.77 0.0 Clathrin heavy chain 1 OS Oryza sativa subsp. japonica GN Os11g0104900 PE 3 SV 1
blastp_uniprot_sprot sp|Q0WLB5|CLAH2_ARATH 1 1619 + 1619 none 95.07 1703 92.65 0.0 Clathrin heavy chain 2 OS Arabidopsis thaliana GN CHC2 PE 1 SV 1
blastp_uniprot_sprot sp|Q68FD5|CLH1_MOUSE 7 1619 + 1613 Gaps:17 95.52 1675 58.13 0.0 Clathrin heavy chain 1 OS Mus musculus GN Cltc PE 1 SV 3
blastp_uniprot_sprot sp|P49951|CLH1_BOVIN 7 1619 + 1613 Gaps:17 95.52 1675 58.06 0.0 Clathrin heavy chain 1 OS Bos taurus GN CLTC PE 1 SV 1
blastp_uniprot_sprot sp|Q00610|CLH1_HUMAN 7 1619 + 1613 Gaps:17 95.52 1675 58.06 0.0 Clathrin heavy chain 1 OS Homo sapiens GN CLTC PE 1 SV 5
blastp_uniprot_sprot sp|P11442|CLH1_RAT 7 1619 + 1613 Gaps:17 95.52 1675 58.00 0.0 Clathrin heavy chain 1 OS Rattus norvegicus GN Cltc PE 1 SV 3
blastp_uniprot_sprot sp|P29742|CLH_DROME 7 1619 + 1613 Gaps:18 95.41 1678 58.53 0.0 Clathrin heavy chain OS Drosophila melanogaster GN Chc PE 1 SV 1
blastp_uniprot_sprot sp|P25870|CLH_DICDI 4 1619 + 1616 Gaps:21 94.75 1694 55.89 0.0 Clathrin heavy chain OS Dictyostelium discoideum GN chcA PE 1 SV 1

37 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 4 376 373 G3DSA:2.130.10.110 "Reactome:REACT_11123" none IPR016025
SUPERFAMILY 457 793 337 SSF48371 none none IPR016024
Pfam 993 1133 141 PF00637 none Region in Clathrin and VPS IPR000547
Pfam 1438 1579 142 PF00637 none Region in Clathrin and VPS IPR000547
Pfam 850 975 126 PF00637 none Region in Clathrin and VPS IPR000547
Pfam 557 691 135 PF00637 none Region in Clathrin and VPS IPR000547
Pfam 1289 1431 143 PF00637 none Region in Clathrin and VPS IPR000547
Pfam 701 841 141 PF00637 none Region in Clathrin and VPS IPR000547
Pfam 1146 1281 136 PF00637 none Region in Clathrin and VPS IPR000547
ProSiteProfiles 700 842 143 PS50236 none Clathrin heavy-chain (CHCR) repeat profile. IPR000547
SUPERFAMILY 5 343 339 SSF50989 "Reactome:REACT_11123" none IPR001473
Pfam 154 197 44 PF01394 "Reactome:REACT_11123" Clathrin propeller repeat IPR022365
Pfam 20 55 36 PF01394 "Reactome:REACT_11123" Clathrin propeller repeat IPR022365
Gene3D 710 939 230 G3DSA:1.25.40.10 none none IPR011990
Gene3D 1197 1535 339 G3DSA:1.25.40.10 none none IPR011990
Gene3D 1536 1619 84 G3DSA:1.25.40.10 none none IPR011990
ProSiteProfiles 847 986 140 PS50236 none Clathrin heavy-chain (CHCR) repeat profile. IPR000547
SUPERFAMILY 901 1067 167 SSF48371 none none IPR016024
SUPERFAMILY 1196 1531 336 SSF48371 none none IPR016024
ProSiteProfiles 1288 1434 147 PS50236 none Clathrin heavy-chain (CHCR) repeat profile. IPR000547
ProSiteProfiles 1142 1283 142 PS50236 none Clathrin heavy-chain (CHCR) repeat profile. IPR000547
ProSiteProfiles 993 1138 146 PS50236 none Clathrin heavy-chain (CHCR) repeat profile. IPR000547
SUPERFAMILY 1053 1195 143 SSF48371 none none IPR016024
SUPERFAMILY 345 500 156 SSF48371 none none IPR016024
PANTHER 3 1619 1617 PTHR10292 none none none
Pfam 344 367 24 PF09268 "Reactome:REACT_11123" Clathrin, heavy-chain linker IPR015348
ProSiteProfiles 551 697 147 PS50236 none Clathrin heavy-chain (CHCR) repeat profile. IPR000547
ProSiteProfiles 1437 1580 144 PS50236 none Clathrin heavy-chain (CHCR) repeat profile. IPR000547
SMART 551 693 143 SM00299 none Clathrin heavy chain repeat homology IPR000547
SMART 1142 1283 142 SM00299 none Clathrin heavy chain repeat homology IPR000547

0 Localization

14 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran_2000_2002_QTL3_Delta.F Qrob_Chr08 8 s_1A3EF7_1406 s_1AIWYC_607 30.17 21,01 40,21 lod 6.8553 0.055
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nPriLBD_A4 Qrob_Chr08 8 PIE175 v_9164_159 31,85 15,39 48,29 lod 2,8308 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04

0 Targeting