Protein : Qrob_P0433510.2 Q. robur
Protein Identifier  ? Qrob_P0433510.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=3) PTHR10217:SF479 - CYCLIC NUCLEOTIDE-GATED ION CHANNEL 16-RELATED (PTHR10217:SF479) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 700  
Kegg Orthology  K05391
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0055085 transmembrane transport The process in which a solute is transported from one side of a membrane to the other.
GO:0005216 ion channel activity Enables the facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. May be either selective (it enables passage of a specific ion only) or non-selective (it enables passage of two or more ions of same charge but different size).
GO:0006811 ion transport The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.

38 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100254180 1 699 + 699 Gaps:7 100.00 704 74.72 0.0 putative cyclic nucleotide-gated ion channel 18-like
blastp_kegg lcl|csv:101227423 1 695 + 695 Gaps:24 99.86 714 74.05 0.0 putative cyclic nucleotide-gated ion channel 18-like
blastp_kegg lcl|csv:101216651 1 695 + 695 Gaps:24 90.48 788 74.19 0.0 putative cyclic nucleotide-gated ion channel 18-like
blastp_kegg lcl|cmo:103487070 1 695 + 695 Gaps:28 90.85 787 73.57 0.0 putative cyclic nucleotide-gated ion channel 18
blastp_kegg lcl|tcc:TCM_016857 1 698 + 698 Gaps:18 99.86 701 72.43 0.0 Cyclic nucleotide-gated channel 18
blastp_kegg lcl|pvu:PHAVU_008G152000g 1 697 + 697 Gaps:28 99.86 690 73.15 0.0 hypothetical protein
blastp_kegg lcl|gmx:100802812 1 699 + 699 Gaps:29 100.00 692 73.12 0.0 putative cyclic nucleotide-gated ion channel 18-like
blastp_kegg lcl|pmum:103330181 1 695 + 695 Gaps:18 100.00 713 71.53 0.0 putative cyclic nucleotide-gated ion channel 18
blastp_kegg lcl|pper:PRUPE_ppa023995mg 1 695 + 695 Gaps:15 100.00 710 71.83 0.0 hypothetical protein
blastp_kegg lcl|aly:ARALYDRAFT_488330 19 699 + 681 Gaps:18 97.75 711 70.07 0.0 ATCNGC18 cyclic nucleotide-gated ion channel 18
blastp_pdb 1wgp_A 438 561 + 124 none 90.51 137 74.19 2e-56 mol:protein length:137 Probable cyclic nucleotide-gated ion channel
blastp_pdb 2ptm_A 373 514 + 142 Gaps:10 68.69 198 29.41 3e-10 mol:protein length:198 Hyperpolarization-activated (Ih) channel
blastp_pdb 3otf_A 373 559 + 187 Gaps:16 77.73 220 29.82 5e-10 mol:protein length:220 Potassium/sodium hyperpolarization-activated
blastp_pdb 3u11_B 373 559 + 187 Gaps:16 81.43 210 29.82 6e-10 mol:protein length:210 Potassium/sodium hyperpolarization-activated
blastp_pdb 3u11_A 373 559 + 187 Gaps:16 81.43 210 29.82 6e-10 mol:protein length:210 Potassium/sodium hyperpolarization-activated
blastp_pdb 3ffq_B 366 559 + 194 Gaps:16 88.12 202 28.09 3e-09 mol:protein length:202 Potassium/sodium hyperpolarization-activated
blastp_pdb 3ffq_A 366 559 + 194 Gaps:16 88.12 202 28.09 3e-09 mol:protein length:202 Potassium/sodium hyperpolarization-activated
blastp_pdb 1q5o_A 366 559 + 194 Gaps:16 85.99 207 28.09 3e-09 mol:protein length:207 Potassium/sodium hyperpolarization-activated
blastp_pdb 1q43_B 366 559 + 194 Gaps:16 85.99 207 28.09 3e-09 mol:protein length:207 Potassium/sodium hyperpolarization-activated
blastp_pdb 1q43_A 366 559 + 194 Gaps:16 85.99 207 28.09 3e-09 mol:protein length:207 Potassium/sodium hyperpolarization-activated
blastp_uniprot_sprot sp|Q9LEQ3|CNG18_ARATH 1 699 + 699 Gaps:15 100.00 706 69.41 0.0 Putative cyclic nucleotide-gated ion channel 18 OS Arabidopsis thaliana GN CNGC18 PE 3 SV 1
blastp_uniprot_sprot sp|Q9SU64|CNG16_ARATH 39 692 + 654 Gaps:18 93.90 705 64.95 0.0 Probable cyclic nucleotide-gated ion channel 16 OS Arabidopsis thaliana GN CNGC16 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SJA4|CNG14_ARATH 39 695 + 657 Gaps:24 90.22 726 64.12 0.0 Probable cyclic nucleotide-gated ion channel 14 OS Arabidopsis thaliana GN CNGC14 PE 2 SV 2
blastp_uniprot_sprot sp|Q8L7Z0|CNG17_ARATH 36 698 + 663 Gaps:29 90.83 720 63.00 0.0 Probable cyclic nucleotide-gated ion channel 17 OS Arabidopsis thaliana GN CNGC17 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SL29|CNG15_ARATH 39 610 + 572 Gaps:8 84.37 678 58.74 0.0 Putative cyclic nucleotide-gated ion channel 15 OS Arabidopsis thaliana GN CNGC15 PE 3 SV 1
blastp_uniprot_sprot sp|Q9M0A4|CNGC9_ARATH 37 695 + 659 Gaps:48 86.08 733 54.52 0.0 Putative cyclic nucleotide-gated ion channel 9 OS Arabidopsis thaliana GN CNGC9 PE 1 SV 1
blastp_uniprot_sprot sp|Q9S9N5|CNGC7_ARATH 37 695 + 659 Gaps:27 88.35 738 52.61 0.0 Putative cyclic nucleotide-gated ion channel 7 OS Arabidopsis thaliana GN CNGC7 PE 3 SV 1
blastp_uniprot_sprot sp|O82226|CNGC6_ARATH 37 695 + 659 Gaps:39 86.48 747 52.48 0.0 Probable cyclic nucleotide-gated ion channel 6 OS Arabidopsis thaliana GN CNGC6 PE 1 SV 2
blastp_uniprot_sprot sp|Q8RWS9|CNGC5_ARATH 37 695 + 659 Gaps:48 88.28 717 52.76 0.0 Probable cyclic nucleotide-gated ion channel 5 OS Arabidopsis thaliana GN CNGC5 PE 2 SV 1
blastp_uniprot_sprot sp|Q9FXH6|CNGC8_ARATH 37 699 + 663 Gaps:24 87.52 753 52.05 0.0 Putative cyclic nucleotide-gated ion channel 8 OS Arabidopsis thaliana GN CNGC8 PE 3 SV 2

26 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 42 236 195 SSF81324 none none none
SUPERFAMILY 305 365 61 SSF81324 none none none
Pfam 466 558 93 PF00027 none Cyclic nucleotide-binding domain IPR000595
Phobius 105 171 67 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Gene3D 366 434 69 G3DSA:1.10.287.630 none none none
Phobius 192 210 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Gene3D 305 365 61 G3DSA:1.10.287.70 none none none
Gene3D 51 235 185 G3DSA:1.10.287.70 none none none
PANTHER 39 240 202 PTHR10217 none none none
ProSiteProfiles 443 573 131 PS50042 none cAMP/cGMP binding motif profile. IPR000595
Phobius 358 699 342 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 211 230 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 172 191 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
SUPERFAMILY 373 568 196 SSF51206 none none IPR018490
SMART 443 574 132 SM00100 none Cyclic nucleotide-monophosphate binding domain IPR000595
Phobius 231 334 104 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 39 240 202 PTHR10217:SF479 none none none
PANTHER 296 641 346 PTHR10217 none none none
Phobius 47 65 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 85 104 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1 46 46 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Pfam 96 360 265 PF00520 none Ion transport protein IPR005821
PANTHER 296 641 346 PTHR10217:SF479 none none none
Phobius 66 84 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 335 357 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Gene3D 443 559 117 G3DSA:2.60.120.10 none none IPR014710

5 Localization

Analysis Start End Length
TMHMM 48 70 22
TMHMM 172 191 19
TMHMM 206 228 22
TMHMM 335 357 22
TMHMM 85 104 19

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2002_QTL13_peak_Bud_burst_3P Qrob_Chr10 10 s_1B1AG7_637 s_1A3A1N_709 19,44 0 49,44 lod 3 5,6
Bourran2_2002_QTL15_peak_Bud_burst_A4 Qrob_Chr10 10 v_7579_71 s_1ATZMJ_189 23,94 0 43,64 lod 3,7 5,4
Bourran2_2014_vSeqBC_3P Qrob_Chr10 10 s_1A6CK6_610 v_7092_29 4,28 0 23,27 lod 2,8619 7
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
PM_1999_QTL16_peak_Bud_burst_3P Qrob_Chr10 10 s_1B6YNI_505 s_1A1ZO_1322 7,48 0 31,48 lod 4 7,1

0 Targeting