Protein : Qrob_P0425070.2 Q. robur
Protein Identifier  ? Qrob_P0425070.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=5) K09647 - mitochondrial inner membrane protease subunit 1 [EC:3.4.99.-] Code Enzyme  EC:3.4.21.89
Gene Prediction Quality  validated Protein length 

Sequence

Length: 183  
Kegg Orthology  K09647
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0006508 proteolysis The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
GO:0008236 serine-type peptidase activity Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
GO:0008233 peptidase activity Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
GO:0006627 protein processing involved in protein targeting to mitochondrion The cleavage of peptide bonds in proteins, usually near the N terminus, contributing to the process of import into the mitochondrion. Several different peptidases mediate cleavage of proteins destined for different mitochondrial compartments.

25 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|rcu:RCOM_1253560 12 159 + 148 none 93.67 158 63.51 2e-67 mitochondrial inner membrane protease subunit putative
blastp_kegg lcl|rcu:RCOM_0633700 12 158 + 147 none 83.52 176 64.63 4e-67 mitochondrial inner membrane protease subunit putative
blastp_kegg lcl|vvi:100255515 12 159 + 148 none 88.62 167 59.46 2e-66 mitochondrial inner membrane protease subunit 1-like
blastp_kegg lcl|cmo:103484382 12 159 + 148 none 84.57 175 65.54 7e-66 mitochondrial inner membrane protease subunit 1-like
blastp_kegg lcl|vvi:100258854 12 159 + 148 none 87.57 169 62.16 3e-65 mitochondrial inner membrane protease subunit 1-like
blastp_kegg lcl|csv:101223494 12 168 + 157 none 89.71 175 62.42 5e-65 mitochondrial inner membrane protease subunit 1-like
blastp_kegg lcl|csv:101209167 12 168 + 157 none 89.71 175 62.42 5e-65 mitochondrial inner membrane protease subunit 1-like
blastp_kegg lcl|pop:POPTR_0007s07770g 12 168 + 157 none 86.26 182 60.51 6e-62 POPTRDRAFT_819903 hypothetical protein
blastp_kegg lcl|pop:POPTR_0005s09580g 16 159 + 144 none 84.21 171 65.97 7e-62 POPTRDRAFT_818337 hypothetical protein
blastp_kegg lcl|cit:102623009 13 159 + 147 none 86.47 170 59.86 4e-61 mitochondrial inner membrane protease subunit 1-like
blastp_uniprot_sprot sp|Q9CQU8|IMP1L_MOUSE 22 168 + 147 Gaps:11 89.16 166 39.19 5e-26 Mitochondrial inner membrane protease subunit 1 OS Mus musculus GN Immp1l PE 2 SV 1
blastp_uniprot_sprot sp|Q96LU5|IMP1L_HUMAN 22 159 + 138 Gaps:11 83.73 166 40.29 1e-24 Mitochondrial inner membrane protease subunit 1 OS Homo sapiens GN IMMP1L PE 2 SV 1
blastp_uniprot_sprot sp|Q28I39|IMP1L_XENTR 16 168 + 153 Gaps:7 92.22 167 35.71 3e-23 Mitochondrial inner membrane protease subunit 1 OS Xenopus tropicalis GN immp1l PE 2 SV 1
blastp_uniprot_sprot sp|O74800|IMP1_SCHPO 25 159 + 135 Gaps:5 84.08 157 37.88 1e-22 Mitochondrial inner membrane protease subunit 1 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN imp1 PE 3 SV 1
blastp_uniprot_sprot sp|Q9UST2|IMP2L_SCHPO 10 162 + 153 Gaps:11 82.22 180 38.51 2e-18 Mitochondrial inner membrane protease subunit 2 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN SPBC336.13c PE 3 SV 1
blastp_uniprot_sprot sp|P46972|IMP2_YEAST 24 159 + 136 Gaps:10 77.97 177 35.51 9e-15 Mitochondrial inner membrane protease subunit 2 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN IMP2 PE 1 SV 1
blastp_uniprot_sprot sp|Q6AZD4|IMP2L_DANRE 27 155 + 129 Gaps:12 71.58 183 35.11 8e-14 Mitochondrial inner membrane protease subunit 2 OS Danio rerio GN immp2l PE 2 SV 1
blastp_uniprot_sprot sp|Q5PQ63|IMP2L_XENLA 27 152 + 126 Gaps:12 75.29 170 36.72 4e-13 Mitochondrial inner membrane protease subunit 2 OS Xenopus laevis GN immp2l PE 2 SV 1
blastp_uniprot_sprot sp|P28627|IMP1_YEAST 23 155 + 133 Gaps:11 75.79 190 33.33 4e-13 Mitochondrial inner membrane protease subunit 1 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN IMP1 PE 1 SV 3
blastp_uniprot_sprot sp|Q96T52|IMP2L_HUMAN 30 153 + 124 Gaps:12 72.00 175 35.71 5e-13 Mitochondrial inner membrane protease subunit 2 OS Homo sapiens GN IMMP2L PE 2 SV 1
rpsblast_cdd gnl|CDD|211726 49 156 + 108 Gaps:24 79.75 163 28.46 1e-16 TIGR02227 sigpep_I_bact signal peptidase I bacterial type. This model represents signal peptidase I from most bacteria. Eukaryotic sequences are likely organellar. Several bacteria have multiple paralogs but these represent isozymes of signal peptidase I. Virtually all known bacteria may be presumed to A related model finds a simlar protein in many archaea and a few bacteria as well as a microsomal (endoplasmic reticulum) protein in eukaryotes.
rpsblast_cdd gnl|CDD|119398 49 155 + 107 Gaps:28 92.94 85 44.30 2e-16 cd06530 S26_SPase_I The S26 Type I signal peptidase (SPase LepB leader peptidase B leader peptidase I EC 3.4.21.89) family members are essential membrane-bound serine proteases that function to cleave the amino-terminal signal peptide extension from proteins that are translocated across biological membranes. The bacterial signal peptidase I which is the most intensively studied has two N-terminal transmembrane segments inserted in the plasma membrane and a hydrophilic C-terminal catalytic region that is located in the periplasmic space. Although the bacterial signal peptidase I is monomeric signal peptidases of eukaryotic cells commonly function as oligomeric complexes containing two divergent copies of the catalytic monomer. These are the IMP1 and IMP2 signal peptidases of the mitochondrial inner membrane that remove leader peptides from nuclear- and mitochondrial-encoded proteins. Also two components of the endoplasmic reticulum signal peptidase in mammals (18-kDa and 21-kDa) belong to this family and they process many proteins that enter the ER for retention or for export to the Golgi apparatus secretory vesicles plasma membranes or vacuole. An atypical member of the S26 SPase type I family is the TraF peptidase which has the remarkable activity of producing a cyclic protein of the Pseudomonas pilin system. The type I signal peptidases are unique serine proteases that utilize a serine/lysine catalytic dyad mechanism in place of the classical serine/histidine/aspartic acid catalytic triad mechanism..
rpsblast_cdd gnl|CDD|119396 49 155 + 107 Gaps:29 92.86 84 43.59 1e-07 cd06462 Peptidase_S24_S26 The S24 S26 LexA/signal peptidase superfamily contains LexA-related and type I signal peptidase families. The S24 LexA protein domains include: the lambda repressor CI/C2 family and related bacterial prophage repressor proteins LexA (EC 3.4.21.88) the repressor of genes in the cellular SOS response to DNA damage MucA and the related UmuD proteins which are lesion-bypass DNA polymerases induced in response to mitogenic DNA damage RulA a component of the rulAB locus that confers resistance to UV and RuvA which is a component of the RuvABC resolvasome that catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. The S26 type I signal peptidase (SPase) family also includes mitochondrial inner membrane protease (IMP)-like members. SPases are essential membrane-bound proteases which function to cleave away the amino-terminal signal peptide from the translocated pre-protein thus playing a crucial role in the transport of proteins across membranes in all living organisms. All members in this superfamily are unique serine proteases that carry out catalysis using a serine/lysine dyad instead of the prototypical serine/histidine/aspartic acid triad found in most serine proteases..
rpsblast_kog gnl|CDD|35392 26 159 + 134 Gaps:5 78.98 176 38.85 1e-33 KOG0171 KOG0171 KOG0171 Mitochondrial inner membrane protease subunit IMP1 [Posttranslational modification protein turnover chaperones].
rpsblast_kog gnl|CDD|36781 32 155 + 124 Gaps:13 72.99 174 39.37 5e-21 KOG1568 KOG1568 KOG1568 Mitochondrial inner membrane protease subunit IMP2 [Posttranslational modification protein turnover chaperones Intracellular trafficking secretion and vesicular transport].

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 10 159 150 PTHR12383:SF14 none none IPR026730
Gene3D 38 162 125 G3DSA:2.10.109.10 none none IPR028360
SUPERFAMILY 39 160 122 SSF51306 none none IPR015927
Pfam 48 117 70 PF00717 none Peptidase S24-like IPR019759
PANTHER 10 159 150 PTHR12383 none none IPR000223
PRINTS 40 56 17 PR00727 none Bacterial leader peptidase 1 (S26A) family signature IPR000223
PRINTS 122 141 20 PR00727 none Bacterial leader peptidase 1 (S26A) family signature IPR000223
PRINTS 93 105 13 PR00727 none Bacterial leader peptidase 1 (S26A) family signature IPR000223

0 Localization

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2002_QTL17_peak_Bud_burst_A4 Qrob_Chr12 12 s_1CTJ3J_556 s_1CTJ3J_556 0 0 25 lod 2,9 6
Bourran2_2014_nSeqBC_3P Qrob_Chr12 12 s_1EO8V5_710 s_1A2VMU_355 11,04 0 32,58 lod 1,7196 4,7

0 Targeting