Protein : Qrob_P0424590.2 Q. robur
Protein Identifier  ? Qrob_P0424590.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=4) PTHR10217:SF489 - CYCLIC NUCLEOTIDE-GATED ION CHANNEL 7-RELATED (PTHR10217:SF489) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 748  
Kegg Orthology  K05391
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0055085 transmembrane transport The process in which a solute is transported from one side of a membrane to the other.
GO:0005216 ion channel activity Enables the facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. May be either selective (it enables passage of a specific ion only) or non-selective (it enables passage of two or more ions of same charge but different size).
GO:0006811 ion transport The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.

37 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cmo:103487043 1 746 + 746 Gaps:19 100.00 735 81.36 0.0 putative cyclic nucleotide-gated ion channel 8
blastp_kegg lcl|csv:101221166 1 746 + 746 Gaps:23 100.00 731 81.94 0.0 putative cyclic nucleotide-gated ion channel 8-like
blastp_kegg lcl|pop:POPTR_0003s18120g 1 741 + 741 Gaps:8 99.73 739 78.70 0.0 POPTRDRAFT_853754 hypothetical protein
blastp_kegg lcl|tcc:TCM_027461 1 746 + 746 Gaps:15 99.07 752 77.99 0.0 Cyclic nucleotide gated channel 8
blastp_kegg lcl|rcu:RCOM_1441620 1 741 + 741 Gaps:4 73.93 1005 77.52 0.0 Cyclic nucleotide-gated ion channel putative (EC:2.7.11.12)
blastp_kegg lcl|vvi:100241716 1 746 + 746 Gaps:5 100.00 743 77.93 0.0 putative cyclic nucleotide-gated ion channel 8-like
blastp_kegg lcl|pop:POPTR_0001s03550g 1 741 + 741 Gaps:6 99.73 745 77.12 0.0 cyclic nucleotide gated channel 7 family protein
blastp_kegg lcl|eus:EUTSA_v10018178mg 6 746 + 741 Gaps:18 99.47 753 76.90 0.0 hypothetical protein
blastp_kegg lcl|tcc:TCM_037043 1 746 + 746 Gaps:19 100.00 739 76.45 0.0 Cyclic nucleotide gated channel 5 isoform 1
blastp_kegg lcl|aly:ARALYDRAFT_335228 6 747 + 742 Gaps:15 99.60 752 76.50 0.0 hypothetical protein
blastp_pdb 1wgp_A 502 625 + 124 none 90.51 137 89.52 5e-71 mol:protein length:137 Probable cyclic nucleotide-gated ion channel
blastp_pdb 1q5o_A 441 578 + 138 Gaps:7 63.29 207 34.35 8e-13 mol:protein length:207 Potassium/sodium hyperpolarization-activated
blastp_pdb 1q43_B 441 578 + 138 Gaps:7 63.29 207 34.35 8e-13 mol:protein length:207 Potassium/sodium hyperpolarization-activated
blastp_pdb 1q43_A 441 578 + 138 Gaps:7 63.29 207 34.35 8e-13 mol:protein length:207 Potassium/sodium hyperpolarization-activated
blastp_pdb 1q3e_B 441 578 + 138 Gaps:7 63.29 207 34.35 8e-13 mol:protein length:207 Potassium/sodium hyperpolarization-activated
blastp_pdb 1q3e_A 441 578 + 138 Gaps:7 63.29 207 34.35 8e-13 mol:protein length:207 Potassium/sodium hyperpolarization-activated
blastp_pdb 3otf_A 441 578 + 138 Gaps:7 59.55 220 34.35 9e-13 mol:protein length:220 Potassium/sodium hyperpolarization-activated
blastp_pdb 3ffq_B 441 578 + 138 Gaps:7 64.85 202 34.35 9e-13 mol:protein length:202 Potassium/sodium hyperpolarization-activated
blastp_pdb 3ffq_A 441 578 + 138 Gaps:7 64.85 202 34.35 9e-13 mol:protein length:202 Potassium/sodium hyperpolarization-activated
blastp_pdb 3u11_B 441 578 + 138 Gaps:7 62.38 210 34.35 9e-13 mol:protein length:210 Potassium/sodium hyperpolarization-activated
blastp_uniprot_sprot sp|Q9FXH6|CNGC8_ARATH 6 747 + 742 Gaps:14 99.60 753 75.73 0.0 Putative cyclic nucleotide-gated ion channel 8 OS Arabidopsis thaliana GN CNGC8 PE 3 SV 2
blastp_uniprot_sprot sp|Q9S9N5|CNGC7_ARATH 6 740 + 735 Gaps:27 99.46 738 77.11 0.0 Putative cyclic nucleotide-gated ion channel 7 OS Arabidopsis thaliana GN CNGC7 PE 3 SV 1
blastp_uniprot_sprot sp|Q8RWS9|CNGC5_ARATH 11 741 + 731 Gaps:24 99.72 717 72.45 0.0 Probable cyclic nucleotide-gated ion channel 5 OS Arabidopsis thaliana GN CNGC5 PE 2 SV 1
blastp_uniprot_sprot sp|O82226|CNGC6_ARATH 1 744 + 744 Gaps:30 99.87 747 69.57 0.0 Probable cyclic nucleotide-gated ion channel 6 OS Arabidopsis thaliana GN CNGC6 PE 1 SV 2
blastp_uniprot_sprot sp|Q9M0A4|CNGC9_ARATH 1 745 + 745 Gaps:33 99.86 733 70.63 0.0 Putative cyclic nucleotide-gated ion channel 9 OS Arabidopsis thaliana GN CNGC9 PE 1 SV 1
blastp_uniprot_sprot sp|O65717|CNGC1_ARATH 95 744 + 650 Gaps:41 88.97 716 58.40 0.0 Cyclic nucleotide-gated ion channel 1 OS Arabidopsis thaliana GN CNGC1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9LNJ0|CNG10_ARATH 90 741 + 652 Gaps:24 90.86 711 57.74 0.0 Probable cyclic nucleotide-gated ion channel 10 OS Arabidopsis thaliana GN CNGC10 PE 2 SV 2
blastp_uniprot_sprot sp|Q9LD40|CNG13_ARATH 46 741 + 696 Gaps:49 96.12 696 55.31 0.0 Putative cyclic nucleotide-gated ion channel 13 OS Arabidopsis thaliana GN CNGC13 PE 3 SV 2
blastp_uniprot_sprot sp|Q9SJA4|CNG14_ARATH 87 744 + 658 Gaps:23 91.87 726 55.32 0.0 Probable cyclic nucleotide-gated ion channel 14 OS Arabidopsis thaliana GN CNGC14 PE 2 SV 2
blastp_uniprot_sprot sp|Q9SL29|CNG15_ARATH 64 742 + 679 Gaps:44 95.13 678 55.50 0.0 Putative cyclic nucleotide-gated ion channel 15 OS Arabidopsis thaliana GN CNGC15 PE 3 SV 1

32 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 113 135 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
SUPERFAMILY 369 429 61 SSF81324 none none none
SUPERFAMILY 102 300 199 SSF81324 none none none
PANTHER 9 35 27 PTHR10217:SF489 none none none
PANTHER 66 309 244 PTHR10217:SF489 none none none
Phobius 384 402 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 422 747 326 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 136 146 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 1 112 112 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 296 360 65 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
ProSiteProfiles 507 637 131 PS50042 none cAMP/cGMP binding motif profile. IPR000595
PANTHER 367 700 334 PTHR10217:SF489 none none none
Pfam 528 623 96 PF00027 none Cyclic nucleotide-binding domain IPR000595
Phobius 223 273 51 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 147 164 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 403 421 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
SUPERFAMILY 436 627 192 SSF51206 none none IPR018490
PANTHER 9 35 27 PTHR10217 none none none
Gene3D 439 498 60 G3DSA:1.10.287.630 none none none
Gene3D 135 299 165 G3DSA:1.10.287.70 none none none
Gene3D 369 429 61 G3DSA:1.10.287.70 none none none
Pfam 154 424 271 PF00520 none Ion transport protein IPR005821
Phobius 274 295 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Gene3D 505 623 119 G3DSA:2.60.120.10 none none IPR014710
PANTHER 66 309 244 PTHR10217 none none none
ProSiteProfiles 643 672 30 PS50096 none IQ motif profile. IPR000048
PANTHER 367 700 334 PTHR10217 none none none
SMART 507 638 132 SM00100 none Cyclic nucleotide-monophosphate binding domain IPR000595
Phobius 202 222 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Coils 655 680 26 Coil none none none

3 Localization

Analysis Start End Length
TMHMM 403 422 19
TMHMM 274 296 22
TMHMM 113 135 22

1 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL4_peak_Bud_burst_3P Qrob_Chr04 4 s_1AHUWN_1101 s_1BRNG7_1618 30,55 0 47,55 lod 2,8 7,4

0 Targeting