Protein : Qrob_P0420870.2 Q. robur
Protein Identifier  ? Qrob_P0420870.2 Organism . Name  Quercus robur
Score  99.0 Score Type  egn
Protein Description  (M=1) PTHR17490:SF4 - gb def: hypothetical protein [synechocystis sp. pcc 6803] Gene Prediction Quality  validated
Protein length 

Sequence

Length: 274  
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Protein Sequence Displayer

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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0003725 double-stranded RNA binding Interacting selectively and non-covalently with double-stranded RNA.

28 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0001s33770g 1 268 + 268 Gaps:15 78.57 322 77.47 1e-134 POPTRDRAFT_847263 hypothetical protein
blastp_kegg lcl|rcu:RCOM_1677030 1 272 + 272 Gaps:11 80.06 326 73.18 2e-131 sua5 putative
blastp_kegg lcl|pmum:103330334 1 255 + 255 Gaps:25 76.22 307 81.20 5e-130 yrdC domain-containing protein mitochondrial
blastp_kegg lcl|cit:102609719 1 259 + 259 Gaps:23 74.21 318 79.24 1e-128 uncharacterized LOC102609719
blastp_kegg lcl|pper:PRUPE_ppa009175mg 1 255 + 255 Gaps:30 75.58 303 82.10 1e-128 hypothetical protein
blastp_kegg lcl|cmo:103491794 1 260 + 260 Gaps:24 76.38 309 77.97 1e-127 yrdC domain-containing protein mitochondrial
blastp_kegg lcl|gmx:100789682 1 260 + 260 Gaps:23 76.95 308 76.79 8e-127 yrdC domain-containing protein mitochondrial-like
blastp_kegg lcl|mdm:103442132 1 259 + 259 Gaps:25 67.61 352 76.47 3e-126 yrdC domain-containing protein mitochondrial
blastp_kegg lcl|cic:CICLE_v10015967mg 8 259 + 252 Gaps:23 95.82 239 79.91 1e-125 hypothetical protein
blastp_kegg lcl|fve:101313820 1 260 + 260 Gaps:23 64.23 369 76.79 3e-125 uncharacterized protein YciO-like
blastp_pdb 1kk9_A 26 245 + 220 Gaps:42 81.45 221 35.00 2e-23 mol:protein length:221 probable translation factor yciO
blastp_pdb 1k7j_A 26 245 + 220 Gaps:42 87.38 206 35.00 4e-23 mol:protein length:206 Protein yciO
blastp_pdb 1jcu_A 22 246 + 225 Gaps:46 87.02 208 32.60 2e-13 mol:protein length:208 conserved protein MTH1692
blastp_uniprot_sprot sp|P0AFR6|YCIO_SHIFL 26 245 + 220 Gaps:42 87.38 206 35.00 2e-22 Uncharacterized protein YciO OS Shigella flexneri GN yciO PE 3 SV 1
blastp_uniprot_sprot sp|P0AFR4|YCIO_ECOLI 26 245 + 220 Gaps:42 87.38 206 35.00 2e-22 Uncharacterized protein YciO OS Escherichia coli (strain K12) GN yciO PE 1 SV 1
blastp_uniprot_sprot sp|P0AFR5|YCIO_ECOL6 26 245 + 220 Gaps:42 87.38 206 35.00 2e-22 Uncharacterized protein YciO OS Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN yciO PE 3 SV 1
blastp_uniprot_sprot sp|P45103|Y1198_HAEIN 26 245 + 220 Gaps:41 87.44 207 34.81 5e-22 Uncharacterized protein HI_1198 OS Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN HI_1198 PE 3 SV 1
blastp_uniprot_sprot sp|A6WHB6|TSAC_SHEB8 25 244 + 220 Gaps:42 95.74 188 30.56 2e-07 Threonylcarbamoyl-AMP synthase OS Shewanella baltica (strain OS185) GN tsaC PE 3 SV 1
blastp_uniprot_sprot sp|A3CYL0|TSAC_SHEB5 25 244 + 220 Gaps:42 95.74 188 30.56 2e-07 Threonylcarbamoyl-AMP synthase OS Shewanella baltica (strain OS155 / ATCC BAA-1091) GN tsaC PE 3 SV 1
blastp_uniprot_sprot sp|A9KUA7|TSAC_SHEB9 25 244 + 220 Gaps:42 95.74 188 30.56 7e-07 Threonylcarbamoyl-AMP synthase OS Shewanella baltica (strain OS195) GN tsaC PE 3 SV 1
blastp_uniprot_sprot sp|A1RDY7|TSAC_SHESW 25 244 + 220 Gaps:42 95.74 188 30.00 1e-06 Threonylcarbamoyl-AMP synthase OS Shewanella sp. (strain W3-18-1) GN tsaC PE 3 SV 1
blastp_uniprot_sprot sp|A4Y1D2|TSAC_SHEPC 25 244 + 220 Gaps:42 95.74 188 30.00 1e-06 Threonylcarbamoyl-AMP synthase OS Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN tsaC PE 3 SV 1
blastp_uniprot_sprot sp|Q9UYB2|SUA5_PYRAB 18 246 + 229 Gaps:42 55.59 340 27.51 2e-06 Threonylcarbamoyl-AMP synthase OS Pyrococcus abyssi (strain GE5 / Orsay) GN sua5 PE 1 SV 1
rpsblast_cdd gnl|CDD|201719 27 243 + 217 Gaps:43 100.00 178 35.39 4e-37 pfam01300 Sua5_yciO_yrdC Telomere recombination. This domain has been shown to bind preferentially to dsRNA. The domain is found in SUA5 as well as HypF and YrdC. It has also been shown to be required for telomere recombniation in yeast.
rpsblast_cdd gnl|CDD|30359 12 247 + 236 Gaps:42 92.89 211 32.14 1e-29 COG0009 SUA5 Putative translation factor (SUA5) [Translation ribosomal structure and biogenesis].
rpsblast_cdd gnl|CDD|161684 22 247 + 226 Gaps:43 92.04 201 33.51 3e-25 TIGR00057 TIGR00057 Sua5/YciO/YrdC/YwlC family protein. partial match to sua5 which is involved in regulation of translation initiation. 3' end of sua5 has matches to sua5 BS3690 and weakly to AF0781 and BB0734.
rpsblast_cdd gnl|CDD|183245 26 245 + 220 Gaps:40 87.38 206 33.89 6e-25 PRK11630 PRK11630 hypothetical protein Provisional.
rpsblast_kog gnl|CDD|38261 4 256 + 253 Gaps:50 79.31 261 24.15 3e-29 KOG3051 KOG3051 KOG3051 RNA binding/translational regulation protein of the SUA5 family [Translation ribosomal structure and biogenesis].

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSiteProfiles 19 245 227 PS51163 none YrdC-like domain profile. IPR006070
PANTHER 89 269 181 PTHR17490 none none none
PANTHER 1 60 60 PTHR17490 none none none
PANTHER 89 269 181 PTHR17490:SF4 none none none
SUPERFAMILY 12 60 49 SSF55821 none none IPR017945
Gene3D 10 247 238 G3DSA:3.90.870.10 none none IPR017945
Pfam 28 60 33 PF01300 none Telomere recombination IPR006070
Pfam 90 243 154 PF01300 none Telomere recombination IPR006070
PANTHER 1 60 60 PTHR17490:SF4 none none none
SUPERFAMILY 90 246 157 SSF55821 none none IPR017945

0 Localization

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran1_2004_QTL4_peak_Bud_burst_3P Qrob_Chr04 4 s_1AHUWN_1101 s_1BRNG7_1618 30,55 0 47,55 lod 2,8 7,4
Bourran1_2000_QTL3_peak_Bud_burst_3P Qrob_Chr04 4 s_1A6DJQ_418 s_1A1PEC_1268 23,09 9,09 44,09 lod 2,3 6,8

0 Targeting